BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg344273

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD sub...   268    3e-71
  AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase...   187    8e-47


> AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit 
p34-Arc | chr1:10960941-10963182 FORWARD LENGTH=1305
Length=1305

 Score =  268 bits (145),  Expect = 3e-71
 Identities = 185/204 (91%), Gaps = 4/204 (2%)
 Strand=Plus/Plus

Query  135  TCTTGATAAAGTTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA  194
            |||||||||||  ||||||||| ||||||| ||||||| ||||||||||||| |||||||
Sbjct  228  TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA  287

Query  195  TGTTCAGGTGA-AAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAAT  252
            ||||||||||| || ||||||||||||| || ||||||||| | ||||||||||||||||
Sbjct  288  TGTTCAGGTGACAA-TGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAAT  345

Query  253  CCACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAA  312
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  346  CCACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAA  405

Query  313  GCTACTTACATGACTGGTTTTCAA  336
             | ||||||  ||| |||||||||
Sbjct  406  ACCACTTACGGGACAGGTTTTCAA  429


> AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase 
| chr5:21330639-21334811 FORWARD LENGTH=2375
Length=2375

 Score =  187 bits (101),  Expect = 8e-47
 Identities = 111/116 (96%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  334   CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAATGGGGAATGATCTTCTCT  393
             |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1775  CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT  1834

Query  394   GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGGGATCCACGATGGC  449
             ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||
Sbjct  1835  GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC  1890



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5