BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344326
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26460.1 | Symbols: SMU2 | RED family protein | chr2:1125493... 1086 0.0
> AT2G26460.1 | Symbols: SMU2 | RED family protein | chr2:11254932-11258973
REVERSE LENGTH=1935
Length=1935
Score = 1086 bits (588), Expect = 0.0
Identities = 694/743 (93%), Gaps = 15/743 (2%)
Strand=Plus/Plus
Query 998 AGGAGAAAGTACCTTATTTCGCTGAGCCTGCTTATGGTCCAGTGCAGCCATCTGCTGGTC 1057
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGGAGAAGGTACCTTATTTCGCTGAGCCTGCTTATGGTCCAGTGCAGCCATCTGCTGGTC 1135
Query 1058 AGGAATGGCAAGATATGAGTGCATAT-G-G---TG------C-A--A-TGGCTCCTGGGT 1102
|||||||||||||||||||||||||| | | || | | | ||||||||||||
Sbjct 1136 AGGAATGGCAAGATATGAGTGCATATGGTGCAATGCAAACTCAAGGACTGGCTCCTGGGT 1195
Query 1103 ACCCGGGAGAGTGGCAGGAGTACCAATATGCAGAGCAAATTGGGTATCAGGAGCAGTACC 1162
|||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1196 ACCCCGGAGAGTGGCAGGAATACCAATATGCAGAGCAAACTGGGTATCAGGAGCAGTACC 1255
Query 1163 TTCAGCCTGGAATGGAGGGTTATGAGGTTCAACCAGAAACGGGTGTTTTACTAGATCCTC 1222
|||| ||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||
Sbjct 1256 TTCAACCTGGAATGGAGGGTTACGAGGTCCAACCAGAAACCGATGTTTTACTAGATCCTC 1315
Query 1223 AACTCATGTCGCAGGAAGAGAAAGATAGGGGTTTGGGATCAGTGTTCAAGCGTGATGACC 1282
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1316 AACTCATGTCGCAGGAAGAGAAAGATAGGGGTTTGGGATCGGTTTTCAAGCGTGATGACC 1375
Query 1283 AAAGGCTTCAACAGTTGAGAGAGAGCGATGCAAGGGAGAAAGATCCAACTTTTGTATCTG 1342
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 1376 AAAGGCTTCAACAGTTGAGGGAGAGTGACGCAAGGGAGAAAGATCCAACTTTTGTATCCG 1435
Query 1343 AGAGCTATTCTGAGTGTTACCCGGGTTACCAAGAGTACAACCATGAGATTGTCGGTAGCG 1402
|||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1436 AGAGTTATTCAGAGTGTTATCCAGGTTACCAAGAGTACAACCATGAGATTGTCGGTAGTG 1495
Query 1403 ATGAAGAAGCAGATTTGTCTAAAATGGACATGGGTGGAAAGGCAAAGGGGGGTTTACATC 1462
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1496 ATGAAGAACCTGATTTGTCTAAAATGGACATGGGTGGAAAGGCAAAGGGTGGTTTACATC 1555
Query 1463 GATGGGACTTTGAGACAGAAGAGGAATGGGAAAAATATAATGAGCAGAAGGAAGCAATGC 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1556 GATGGGACTTTGAGACAGAAGAGGAATGGGAAAAATATAATGAGCAGAAGGAAGCGATGC 1615
Query 1523 CAAAAGCAGCGTTCCAATTCGGGGTAAAGATGCAAGATGGTCGAAAGACGAGAAAGCAGA 1582
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1616 CAAAAGCGGCGTTCCAATTCGGGGTAAAGATGCAAGATGGTCGAAAGACAAGGAAGCAGA 1675
Query 1583 ACCGTGACCGTGACCAAAAGCTCAATAACGAACTTCACCAGATCAATAAGATACTTACGA 1642
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1676 ACCGTGACCGTGACCAGAAGCTCAATAATGAACTTCACCAGATCAATAAGATACTTACGA 1735
Query 1643 GAAAGAAGATGGAGAAGGAGGGTGGGGATGTTGCTTCTTTAGATGCTGTCGAGGCACAGA 1702
|||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
Sbjct 1736 GAAAGAAGATGGAGAAGGAGGGTGGGGATGTTGCTTCTTTGGATGCCGCCGAGGCACAAA 1795
Query 1703 CTCCCAAGAGATCCAAGCATTGA 1725
|||| ||||||||||||||||||
Sbjct 1796 CTCCTAAGAGATCCAAGCATTGA 1818
Score = 800 bits (433), Expect = 0.0
Identities = 496/527 (94%), Gaps = 2/527 (0%)
Strand=Plus/Plus
Query 519 GGAGGGTGGCTATACCCATGACATACCAACCACGCTATATAGGAGTAAAGCTGACTGCCC 578
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 552 GGAAGGTGGCTATACCCATGACATACCGACCACGTTATATAGGAGTAAAGCTGACTGCCC 611
Query 579 CATGCCCGAGGAACTGGTCACAGTCAATGTTGATGGTTCTGTGCTAGATCGAATCGCTAA 638
||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 612 GGTGCCCGAGGAATTTGTCACAGTCAATGTTGATGGTTCTGTGCTAGATCGAATTGCTAA 671
Query 639 AATCATGTCATACCTTCGCCTTGGATCATCAGGGAAAGTTCTCaagaagaaaaagaaaga 698
|||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 672 AATCATGTCATATCTTCGCCTTGGGTCGTCGGGGAAAGTTCTCAAGAAGAAAAAGAAAGA 731
Query 699 aaaagatgggaaaggaaagaTGTCAACTATTGCTAATGAGTATGATGAAGACAATAATCA 758
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |
Sbjct 732 AAAAGATGGGAAAGGAAAGATGTCAACTATTGCTAATGATTATGATGAAGACGACAATAA 791
Query 759 ATCTAAAG-TTGAGAATGGATCTTCTGTAAACCTGAGTGAAAGGGAAGTTTTGCCTCCTC 817
|||| ||| ||||||||||||||||||| ||| | ||||| ||||||||||| |||||||
Sbjct 792 ATCT-AAGATTGAGAATGGATCTTCTGTGAACATAAGTGACAGGGAAGTTTTACCTCCTC 850
Query 818 CTCCGCCATTACCCCCTGGGATCAACCATCTGGATTTGAGTACGAAACAAGAAGAACCCC 877
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 851 CTCCGCCATTACCACCTGGGATAAACCATCTGGATTTGAGTACGAAACAAGAAGAACCCC 910
Query 878 CTGTTGCCAGGACAGACGATGATGACATATTTGTTGGTGAAGGTGTCGACTACACGGTTC 937
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 911 CTGTTGCCAGGACAGACGATGATGACATATTTGTTGGTGAAGGCGTCGATTACACGGTTC 970
Query 938 CTGGTAAAGATGTGACGCAGAGTCCTATTTCTGAGGATATGGAAGAATCTCCCAGGGATA 997
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 971 CTGGTAAAGATGTGACACAGAGTCCTATTTCTGAGGACATGGAAGAATCTCCCAGGGATA 1030
Query 998 AGGAGAAAGTACCTTATTTCGCTGAGCCTGCTTATGGTCCAGTGCAG 1044
||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1031 AGGAGAAAGTATCTTATTTCGATGAGCCTGCTTATGGTCCAGTGCAG 1077
Score = 717 bits (388), Expect = 0.0
Identities = 454/486 (93%), Gaps = 3/486 (1%)
Strand=Plus/Plus
Query 8 CTTCGAAATCTCATTACAAGGAGAAAATTGCTCGTCGGAGGGAAGAGAAATTAGAGGAAT 67
|||| ||||| ||| |||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 68 CTTCAAAATCGCATCACAAGGAGAAAACCGCTCGTCGGAGAGAGGAGAAACTAGAGGAAT 127
Query 68 CCGATAATCCAAAATACAGAGACCGTGCTAAAGAACGAAGAGAGAATCAAAATCCTGATT 127
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 128 CCGATAATCCAAAATACAGAGATCGTGCTAAAGAAAGAAGAGAGAATCAAAATCCTGATT 187
Query 128 ATGATCCATCAGAGCTTGGCTCTTTCCACGCCGTTGCTCCTCCCGGAGCTGTCGATATCC 187
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 188 ATGATCCATCAGAGCTTAGTTCTTTCCATGCCGTTGCTCCTCCCGGAGCTGTCGATATCC 247
Query 188 GTGCTGCTGATGCACTTAAGCTATCTATTGAGAACAGCAAGTATCTTGGAGGTGATGTTG 247
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 248 GTGCTGCTGATGCACTTAAGATATCTATTGAGAACAGCAAATATCTTGGAGGTGATGTTG 307
Query 248 AACATACTCATTTGGTTAAGGGGTTGGATTATGCTCTGTTGAATAAAGTACGAAGCGAAA 307
||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 308 AACATACCCATTTAGTTAAGGGTTTGGATTATGCTTTGTTGAATAAAGTACGAAGCGAAA 367
Query 308 TCGTCAAGAAACCTGATGGTGAAGA---TGATGGTGGCAAGACTAGTGTACCTAAGGAAG 364
|||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 368 TCGTTAAGAAACCTGATGGTGAAGATGGTGATGGTGGGAAGACTAGTGCGCCTAAGGAAG 427
Query 365 ATCAACGAGTTACTTTCCGAACCATGGCTGCTAAGTCAGTTTACCAGTGGATTGTTAAGC 424
|||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 428 ATCAGCGAGTTACTTTCCGTACCATAGCTGCAAAGTCAGTTTACCAGTGGATTGTTAAGC 487
Query 425 CTCAGACTATCATCAAGTCTAATGAGATGTTCCTTCCTGGTAGAATGACATTTGTCTATG 484
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 488 CTCAGACTATCATCAAGTCTAATGAGATGTTTCTTCCCGGTAGAATGACATTTGTCTATG 547
Query 485 ATATGG 490
||||||
Sbjct 548 ATATGG 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5