BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344393
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26880.1 | Symbols: AGL41 | AGAMOUS-like 41 | chr2:11459906-... 797 0.0
AT2G26882.1 | Symbols: | other RNA | chr2:11460219-11461021 FO... 375 3e-103
> AT2G26880.1 | Symbols: AGL41 | AGAMOUS-like 41 | chr2:11459906-11461099
REVERSE LENGTH=1194
Length=1194
Score = 797 bits (431), Expect = 0.0
Identities = 596/674 (88%), Gaps = 18/674 (3%)
Strand=Plus/Plus
Query 1 ATGGATGTCGAATTATATCTAAATGAGAAGACAAATAAGGTTAATGAAAAAATGATAAAG 60
|||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 327 ATGGATATTGAATTATTTCTAAATGAGAAGACAAATAAGGTTAATGAAAAGTTGATAAAG 386
Query 61 AGTTGTCAA-AAGAGTAAAGAGTATGTCACTAATGAGTTGATGATGCAA-T-----GCGG 113
|||||| || |||| |||||||||||||| ||||||||||||||||||| | ||||
Sbjct 387 AGTTGT-AAGAAGAATAAAGAGTATGTCAGTAATGAGTTGATGATGCAACTACAACGCGG 445
Query 114 TCGTACAATCAATGCTCTTAACTTAAGTGAGATCTATACATTACTATCTTTCTCAAGGGA 173
||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 446 TCGTAGAATCCATGATCTTAACTTAAGTGAGATCTATACATTACTATCTTACTCAAGGGA 505
Query 174 TACTATCATATCTCTTAGGAAGAAGCTAGATTTCATGCAGTTTTCTCCTCTTCGTGATCT 233
|||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 506 AACTATCATGTCTTTTAGGAAGAAGTTTGATTTCATGCAGCATTCTCCTCTTCGTGATCC 565
Query 234 ACCTGTGCTTCCATTTGAAACGCAAGTCGAACAGTTTAAGATCACCACAAATGATGCTTT 293
||| ||||||||||| || |||||||||||||||||||| |||||| || || |||||
Sbjct 566 ACCGGTGCTTCCATTCGAGGTGCAAGTCGAACAGTTTAAGAGCACCACTAAGGACGCTTT 625
Query 294 CTTAGGAGGTGATCAAGATGATGAGAGAGCTGGGAACACGAATGAAGCAACAAAAATGAA 353
||||| ||||||| ||| | |||||||||| ||||||| ||||||||||||| ||| ||
Sbjct 626 TTTAGGGGGTGATCTAGACGTTGAGAGAGCTAGGAACACAAATGAAGCAACAAGAAT-AA 684
Query 354 T-AACATTGATAGTTTAAGGAAGAATAAAAGTTATTACTTAATTGAACAATGGTTTCCAA 412
| |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 685 TTAACATTGATAGTTTAAGGGAGAATAAAAGTTATTACTTAATAGATCAATGGTTTCCAA 744
Query 413 CATCCA-AACCGCCTAAACCTGTAATATACCAGCAAATTGGGTATGAAAATCCAAACCGT 471
|| || |||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 745 CA-CCTGAACCGCCTAAACCTGTAACATACCAGCAAATTGGGTATGAAACTTCAAACCGT 803
Query 472 AGAGGCTACTATCCATACCATAA-AAGCAGTAGCAATGGGAACCCTAATTTGGAGACGAT 530
||||||||| |||||||||| | ||| ||||||||||||||||||||||| |||| |||
Sbjct 804 AGAGGCTACAATCCATACCA-AGGAAGTAGTAGCAATGGGAACCCTAATTTCGAGATGAT 862
Query 531 GTCAGTTTGCCCCCAAGTGATGACTTTCAAGGATTTCG-TTGGATCTGCCTCTCAACCAT 589
|||||||| |||| |||||||||||||| ||| || || |||||||| ||||||||||||
Sbjct 863 GTCAGTTT-CCCCGAAGTGATGACTTTCCAGGGTT-CGGTTGGATCTACCTCTCAACCAT 920
Query 590 TACAACATCAGAACATGAAAAATAATCCAATTGTGGGTATGAATCAACCTAGAAAATACC 649
|||||||||| |||||||| || |||||||| |||| |||||||||||| || ||||||
Sbjct 921 TACAACATCAAAACATGAATAAGAATCCAATAGTGGCTATGAATCAACCAAGCCAATACC 980
Query 650 CTTTTGATTTCATG 663
|||||||||| |||
Sbjct 981 CTTTTGATTT-ATG 993
> AT2G26882.1 | Symbols: | other RNA | chr2:11460219-11461021
FORWARD LENGTH=684
Length=684
Score = 375 bits (203), Expect = 3e-103
Identities = 289/330 (88%), Gaps = 8/330 (2%)
Strand=Plus/Minus
Query 1 ATGGATGTCGAATTATATCTAAATGAGAAGACAAATAAGGTTAATGAAAAAATGATAAAG 60
|||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 436 ATGGATATTGAATTATTTCTAAATGAGAAGACAAATAAGGTTAATGAAAAGTTGATAAAG 377
Query 61 AGTTGTCAA-AAGAGTAAAGAGTATGTCACTAATGAGTTGATGATGCAA-T-----GCGG 113
|||||| || |||| |||||||||||||| ||||||||||||||||||| | ||||
Sbjct 376 AGTTGT-AAGAAGAATAAAGAGTATGTCAGTAATGAGTTGATGATGCAACTACAACGCGG 318
Query 114 TCGTACAATCAATGCTCTTAACTTAAGTGAGATCTATACATTACTATCTTTCTCAAGGGA 173
||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 317 TCGTAGAATCCATGATCTTAACTTAAGTGAGATCTATACATTACTATCTTACTCAAGGGA 258
Query 174 TACTATCATATCTCTTAGGAAGAAGCTAGATTTCATGCAGTTTTCTCCTCTTCGTGATCT 233
|||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 257 AACTATCATGTCTTTTAGGAAGAAGTTTGATTTCATGCAGCATTCTCCTCTTCGTGATCC 198
Query 234 ACCTGTGCTTCCATTTGAAACGCAAGTCGAACAGTTTAAGATCACCACAAATGATGCTTT 293
||| ||||||||||| || |||||||||||||||||||| |||||| || || |||||
Sbjct 197 ACCGGTGCTTCCATTCGAGGTGCAAGTCGAACAGTTTAAGAGCACCACTAAGGACGCTTT 138
Query 294 CTTAGGAGGTGATCAAGATGATGAGAGAGC 323
||||| ||||||| ||| | |||||||||
Sbjct 137 TTTAGGGGGTGATCTAGACGTTGAGAGAGC 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5