BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg344410

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38010.2 | Symbols:  | Neutral/alkaline non-lysosomal cerami...   226    2e-58


> AT2G38010.2 | Symbols:  | Neutral/alkaline non-lysosomal ceramidase 
| chr2:15906862-15909931 FORWARD LENGTH=2443
Length=2443

 Score =  226 bits (122),  Expect = 2e-58
 Identities = 154/169 (91%), Gaps = 4/169 (2%)
 Strand=Plus/Plus

Query  292   GGTCTAAC-AGTTAATGCTACGTTTTGGTCGGGATGTCCTCGAAACT-ATTCGATGAAGG  349
             |||| ||| |||||| || ||||||||||| |||||||||||||| | ||| |||||  |
Sbjct  2062  GGTC-AACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAA-TGATTTGATGACTG  2119

Query  350   AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGTTCCAGTGTATG  409
             |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  2120  AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGTGTATG  2179

Query  410   ACGACGATGACTTCAGTTTGAAGTTGAAGTGGTCGAGACCGGCCAAGCT  458
             | ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  2180  ATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCT  2228


 Score =  139 bits (75),  Expect = 2e-32
 Identities = 83/87 (95%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  214   GCCTCAACGCTATATGGACCACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA  273
             ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1834  GCCTCAACGTTATACGGACGACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA  1893

Query  274   GCCACAGCTTTGGTTAACGGTCTAACA  300
             ||||||||||| |||||||||||||||
Sbjct  1894  GCCACAGCTTTAGTTAACGGTCTAACA  1920


 Score =  121 bits (65),  Expect = 8e-27
 Identities = 85/95 (89%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  117   AGAGTTCACTACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTCCTCATCTC  176
             ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  1659  AGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTTCTCATTTC  1718

Query  177   TTTGGACAGCAAAGAATTTGGCAACAATATGCATG  211
             || ||||  ||| |||||  ||||||| |||||||
Sbjct  1719  TTCGGACCCCAAGGAATTCAGCAACAACATGCATG  1753


 Score = 56.5 bits (30),  Expect = 2e-07
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  463   TTGAGTGGAGGGTACCGGAATCTGCGGTAG  492
             ||||||||||||||||||||||||||||||
Sbjct  2252  TTGAGTGGAGGGTACCGGAATCTGCGGTAG  2281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5