BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344420
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 619 8e-177
> AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to
58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa
- 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 9 (source: NCBI BLink). | chr2:16210857-16214232 FORWARD
LENGTH=1527
Length=1527
Score = 619 bits (335), Expect = 8e-177
Identities = 543/631 (86%), Gaps = 64/631 (10%)
Strand=Plus/Plus
Query 29 CGTTTGGTGGTGGAAGGACACTCCGACCGGGGGATTCAGTTGAGACCGCTGAAGAGAGGA 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGTTTGGTGGTGGAAGGACACTCCGACCGGGGGATTCAGTTGAGACCGCTGAAGAGAGGA 839
Query 89 TTGTGAGAGAA-AAGCAGACaaaaaaaTTTCTCATAGCCTACAAGGAATCAATCGGACTG 147
||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 840 TTGTGAGAGAAGAAA-AGACAAAAAAATTGCTCATAGCCTACAAGGAATCACTCGGACTG 898
Query 148 AATATTGATCCCAAACTCAAACTTGAGTGTGAGAAGGCAATAGACGAGGGGAACTCGCTT 207
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AACATTGATCCCAAACTCAAACTTGAGTGTGAGAAGGCAATAGACGAGGGGAACTCGCTT 958
Query 208 ATGGATTCTGGGAGACTCAAGGAAGCTTTGCCATACTATGAAAAG---A-G-------T- 255
||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 959 ATGGATTCTGGGAAACTCAAGGAAGCTTTGCCATACTATGAAAAGGTCATGGAGAAAATA 1018
Query 256 G-----A-G------CTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCA 303
| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCA 1078
Query 304 CTTCGAAAG-C-G-CA------------TGTATGAGAAGCTTCTATCCCACCCGAATCCG 348
||||||||| | | || |||||||||||||| | ||||| || || |||
Sbjct 1079 CTTCGAAAGACAGACAAAGCAAGGCGCATGTATGAGAAGCTTATTTCCCATCCAAACCCG 1138
Query 349 AGAGTGAGCAAGAAAGCGAGGCAGTTGATGTTCAGTTTTCAGGCAATGGAGATGCTGAAG 408
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1139 GGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCAGTTTTCAGGCAATGGAGATGCTGAAG 1198
Query 409 GTTAAGGGGTCGAGCTT--CATGGAGGGAAACACTGGTTATCAGGACTACTTTGAAGCCT 466
||||||||||||||||| | || ||| ||||||||||||||||||||||||||||||||
Sbjct 1199 GTTAAGGGGTCGAGCTTTGC-TGAAGG-AAACACTGGTTATCAGGACTACTTTGAAGCCT 1256
Query 467 TTGACAAAGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGCAATGGGGA 526
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1257 TTGTTGAAGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGAAATGGGGA 1316
Query 527 TA--TG------T-------G--ATTCTTTTTGCGTCTCCGATTCTAATGGTCTTCATTT 569
|| || | | |||||| |||| ||||||||||||||||||||||||
Sbjct 1317 TAAATGAGACACTCCTATATGTGATTCTTCTTGCTTCTCCGATTCTAATGGTCTTCATT- 1375
Query 570 TGTGGCTGCACTGAGAGGGAATATGCACTGA 600
|| ||||||| ||||||| ||| ||||||
Sbjct 1376 -GTAGCTGCACAGAGAGGGTATACACACTGA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5