BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344468
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27190.1 | Symbols: PAP1, ATPAP1, PAP12, ATPAP12 | purple ac... 2178 0.0
> AT2G27190.1 | Symbols: PAP1, ATPAP1, PAP12, ATPAP12 | purple
acid phosphatase 12 | chr2:11621222-11623618 REVERSE LENGTH=1768
Length=1768
Score = 2178 bits (1179), Expect = 0.0
Identities = 1335/1412 (95%), Gaps = 4/1412 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCAAGATCTGACCTCAAAATCAAACGAGTTTCTTTCATAATCTTCTTGTTATGT 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 181 ATGAGTTCAAGATCTGACCTCAAAATCAAACGAGTTTCTTTGATAATCTTCTTGCTAAGT 240
Query 61 GTTCTTGTTGAGTTATGCCATGGAGGAATCACCAGTGAATATGTCAGAGCAAGTGATTTA 120
|||||||||||||| ||| ||||||| |||| |||||||||||||||| ||||||||||
Sbjct 241 GTTCTTGTTGAGTTTTGCTATGGAGGGTTCACAAGTGAATATGTCAGAGGAAGTGATTTA 300
Query 121 CCAGATGACATGCCATTAGACAGCGATGTCTTTGCATTTCCTCCTGGTCCTAATTCACCT 180
||||||||||||||| ||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 301 CCAGATGACATGCCACTAGACAGCGATGTTTTTGAAGTTCCTCCTGGTCCTAATTCACCT 360
Query 181 CAACAAGTTCATTTAACGCAAGGGAACCATGAAGGTAATGGAGTGATTATTTCTTGGGTG 240
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CAACAGGTTCATGTAACGCAAGGGAACCATGAAGGTAATGGAGTGATCATTTCTTGGGTG 420
Query 241 ACTCCGGTTAAGCCTGGTTCAAATACTGTTCATTATTGGTCTGAGAATGAGAAATCGAAG 300
|||||||||||||| ||||| || |||||||| ||||||| ||||||||||||||||| |
Sbjct 421 ACTCCGGTTAAGCCCGGTTCTAAGACTGTTCAATATTGGTGTGAGAATGAGAAATCGAGG 480
Query 301 AAACAAGCAGAAGGAACCGTTAATACTTACCGATTCTTTAATTACACTTCTGGTTACATC 360
||||||||||||| ||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 481 AAACAAGCAGAAGCAACAGTTAATACTTACCGGTTCTTTAATTACACGTCTGGTTATATT 540
Query 361 CATCATTGCCTCATCAATGATTTAAAATTTGATACGAAATACTACTACGAAATTGGGAGT 420
|| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 CACCATTGCCTCATCGATGATTTGGAATTTGATACGAAATACTACTACGAAATTGGGAGT 600
Query 421 GGCAGGTGGTCCAGACGGTTCTGGTTCTTCACT-CCGCCTAAACCAGGCCCTGACGTACC 479
|||| |||||||||||||||||||||||| | | ||||||||| ||||||||||||||||
Sbjct 601 GGCAAGTGGTCCAGACGGTTCTGGTTCTTTA-TCCCGCCTAAATCAGGCCCTGACGTACC 659
Query 480 TTACACATTTGGATTAATTGGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTACACATTTGGATTAATTGGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAG 719
Query 540 CCATTATGAGATGAATCCGGGGAAAGGACAGGCTGTTCTGTTTGTAGGAGACTTGTCTTA 599
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 720 CCATTATGAGATGAATCCGGGAAAAGGACAAGCGGTTCTGTTTGTAGGAGACTTGTCTTA 779
Query 600 CGCGGATCGTTACCCTAACCATGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGA 659
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGCGGATCGCTACCCTAACCACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGA 839
Query 660 GAGAAGTGTTGCTTATCAACCTTGGATATTGACTGCTGGCAACCACGAAATCGACTTCGT 719
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 GCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTGGCAACCACGAAATCGACTTCGT 899
Query 720 TCCTGACATTGGTGAAATAGAACCATTCAAGCCTTTTATGAATCGGTATCATACGCCATA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 TCCTGACATTGGTGAAATAGAACCATTCAAGCCTTTTATGAATCGGTATCATACGCCACA 959
Query 780 TAAGGCATCGGGAAGTATATCTCCATTGTGGTATTCCATCAAAAGGGCGTCGGCTTATAT 839
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TAAGGCATCAGGAAGTATCTCTCCATTGTGGTATTCCATCAAAAGGGCGTCAGCTTATAT 1019
Query 840 TATTGTTATGTCGTGTTACTCGTCTTATGGGAAATACACACCTCAATACAAATGGCTCGA 899
|||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 1020 TATTGTTATGTCATGTTACTCATCTTATGGGATATACACACCTCAATACAAATGGCTGGA 1079
Query 900 AAAGGAGTTGCAAGGAGTGAATCGAACAGAGACGCCATGGCTTATTGTCTTAGTACATTG 959
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 1080 AAAGGAGTTACAAGGAGTGAATCGAACAGAGACGCCATGGCTTATAGTCTTAGTGCATAG 1139
Query 960 CCCGTTATACAGTAGCTATGTGCATCATTACATGGAAGGTGAAACATTGAGAGTCATGTA 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCCGTTTTACAGTAGCTATGTGCATCATTACATGGAAGGTGAAACATTGAGAGTCATGTA 1199
Query 1020 CGAACAATGGTTTGTTAAATACAAGGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTA 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CGAACAATGGTTTGTCAAATACAAGGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTA 1259
Query 1080 TGAGAGATCGGAACGTGTTTCTAACATTGCTTACAACATTGTCAATGGACTGTGTGAGCC 1139
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1260 TGAGAGATCGGAACGTGTTTCTAATATTGCTTACAACATTGTCAATGGATTGTGTGAGCC 1319
Query 1140 AATACCGGATGAGTCAGCTCCTGTATACATAACGATCGGGGATGGAGGAAACTCGGAAGG 1199
|||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||
Sbjct 1320 AATATCGGATGAGTCAGCTCCTATATACATCACAATCGGGGATGGCGGAAACTCGGAAGG 1379
Query 1200 CTTGGTTACTGACATGATGCAGCCACAACCAAAATACTCCGCCTTTCGAGAACCTAGCTT 1259
|||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1380 CTTGCTTACCGACATGATGCAGCCACAACCAAAATACTCCGCGTTTCGAGAAGCTAGCTT 1439
Query 1260 TGGGCACGGGTTGCTAGAGATTAAAAACAGAACTCATGCTTACTTCAGCTGGAATAGGAA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1440 TGGGCACGGGTTGCTAGAGATTAAAAACAGAACTCATGCTTACTTCAGCTGGAATCGGAA 1499
Query 1320 CCAAGATGGGAACTCTGTGGCAGCGGATTCTGTGTGGTTG-TTCAATCGGTTTTGGAGAG 1378
||||||||||||| | |||||||| ||||||||||||||| || |||||||||||| |||
Sbjct 1500 CCAAGATGGGAACGCCGTGGCAGCAGATTCTGTGTGGTTGCTT-AATCGGTTTTGGCGAG 1558
Query 1379 GTCAAAAGAAGACATGGCTTGATGCATTTTAA 1410
|||||||||||||||||||||||||||||||
Sbjct 1559 CTCAAAAGAAGACATGGCTTGATGCATTTTAA 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5