BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344480
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27240.1 | Symbols: | Aluminium activated malate transporte... 1280 0.0
AT1G08440.1 | Symbols: | Aluminium activated malate transporte... 885 0.0
> AT2G27240.1 | Symbols: | Aluminium activated malate transporter
family protein | chr2:11659579-11662408 FORWARD LENGTH=1521
Length=1521
Score = 1280 bits (693), Expect = 0.0
Identities = 781/824 (95%), Gaps = 3/824 (0%)
Strand=Plus/Plus
Query 615 AGATTTTGGGGACAAATATTGTGAAGTGGTAGAAAATGATGACACCAAAGAGGTTGACAA 674
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 693 AGATTTTGGGGACAAGTATTGTGAAGTGGTAGAAAATGATGGCGCCAAAGAGGTTGACAA 752
Query 675 ACGAAAAAAGGATTTTGACAACTATAAAAGTGTTCTCAACTCAAAAAGCAATGAAGAATC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ACGAAAAAAGGATTTTGACAACTATAAAAGTGTTCTCAACTCAAAAAGCAATGAAGAATC 812
Query 735 TTTGGCTAATTTTGCGAAATGGGAACCTGGTCACGGCCAATTCAGATTCCGGCATCCTTG 794
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TTTGGCTAATTTTGCAAAATGGGAACCTGGTCACGGCCAATTCAGATTCCGGCATCCTTG 872
Query 795 GAAACAATATCTAGCTGTCGGTGAATTAATCCGACAATGTGCTTACAGAATTCATACCCT 854
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 873 GAAACAATACCTAGCTGTCGGTGAATTAATCCGACAATGTGCTTACCGAATTCATGCCCT 932
Query 855 GAATTCATCATATCTTAATGCAGATAATAAGGTGTCAATTGATATTAAAAAGAAACTTGG 914
|||||||| || ||||||||||||||| |||| ||| ||||||||||||||||||| ||
Sbjct 933 GAATTCAT-AT--CTTAATGCAGATAATCAGGTTTCAGTTGATATTAAAAAGAAACTAGG 989
Query 915 AGAACCATTGAGAAGAATGAGTTTGGAGTCTGGCAAAGCGATGAAAGAAATGTCAATTTC 974
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 990 AGAACCATTGAGAAGAATGAGTTTGGAGTCCGGCAAAGCGATGAAAGAAATGTCAATTTC 1049
Query 975 ATTGAAGAAAATGACCAAACCATCTTCTTCTGATCTTCATGTCCAAAACGCAAGATCTGC 1034
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1050 GTTAAAGAAAATGACTAAACCATCTTCTTCTGATCTTCATGTCCAAAACGCAAAATCTGC 1109
Query 1035 CTCCAAATCACTCACCAACTTACTTAATTCAGGCATCTTGAAAGAAGTTGAGCCACTAGA 1094
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1110 CTGTAAATCACTCACCAACTTACTTAATTCAGGCATCTTGAAAGAAGTTGAGCCTCTAGA 1169
Query 1095 ATTGGTCTCACTTCTGACCGCGATTTCCTTGCTCATCGATATTATAAACCTGACAGAGAA 1154
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1170 ATTGGTCTCCCTTCTGACCGCGATCTCCTTGCTCATCGATATTATAAACCTAACAGAGAA 1229
Query 1155 AATCTTGGAAGCCCTACATGAACTAGCATCCGCTGCAAAATTTAAGAACAAGATTGAACA 1214
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1230 AATCTTGGAATCCCTACATGAACTAGCAACCGCTGCAAAATTTAAGAACAAGATTGAACA 1289
Query 1215 GCCTTTGTTTTCCGAGAAACAAAAAGCCAAAAGCTTTGTTAGTCTCCGGTCGATAAAATG 1274
||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||
Sbjct 1290 TCCTTTGTTTTCCGAGAAACCAAAAGCCAAAAGCTTTGTTAGTGTCCGATCGATCAAATG 1349
Query 1275 TCATGATGAGCATGTGGTCACAATTATTGAAGATGATGGTAATAATCATGACACATCAAA 1334
||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1350 TCATGATGATCATGTGGTCATAATTATTGAAGATGATGGTAATAATGATGACACATCAAA 1409
Query 1335 AAATGATAACCGCTCGAAGGAGGTTTCAATCCATGAGAAACATGAAGACGGTGATACGCA 1394
||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1410 AAATGATAATGGCTCGAAGGAGGTTTCGATCCATGAGAAACATGAAGACGATGATACGCA 1469
Query 1395 TGTCCACGCAAGATGTGTTTCATGTGGTCACACAATTGTTTGTG 1438
||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1470 TGTAGACGCAAGATGTGTTTCATGTGGTCACACAAGCGTTTGTG 1513
Score = 994 bits (538), Expect = 0.0
Identities = 590/616 (96%), Gaps = 0/616 (0%)
Strand=Plus/Plus
Query 1 ATGgaaaaagtgagagagattgtgagagaagggagaagagtggcaaaagaagacccgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAAAGTGAGAGAGATTGTGAGAGAAGGGAGAAGAGTGGCAAAAGAAGACCCGAGG 60
Query 61 agagTAGTTCACTCGTTCAAAGTGGGTCTGGTTCTTGCCTTAGTCTCTTCCTTCTATTAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AGAGTAGTTCACTCGTTCAAAGTGGGTCTGGTTCTTGCCTTAGTCTCTTCCTTCTACTAT 120
Query 121 TACCAACCTCTCTACGACAGCTTCGGTGTTAATGCAATGTGGGCTGTTATGACGGTTGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACCAACCTCTCTACGACAGCTTCGGTGTTAATGCAATGTGGGCTGTTATGACGGTTGTT 180
Query 181 GTCGTCTTCGAGTTCTCTGTTGGAGCCACGCTCGGTAAAGGTCTTAACAGAGTGGCGGCA 240
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 181 GTCGTCTTCGAGTTCTCTGTTGGGGCCACGCTTGGTAAAGGACTTAACAGAGTGGCGGCA 240
Query 241 ACACTATTTGCTGGGGGACTTGGAATCGGAGCTCATCACCTGGCTAGCATGTCTGGCCCA 300
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 ACACTATTTGCGGGGGGACTTGGAATCGGAGCTCATCACCTGGCCAGCATGTCTGGTCCG 300
Query 301 ACAGGAGAACCCATTCTTCTCGCAATCTTTGTCTTTGTACAAGCTGCCTTGTCGACGTTT 360
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 301 ACAGGAGAACCCATTCTTCTCGCAGTCTTTGTCTTTGTACAAGCTGCGTTGTCGACGTTT 360
Query 361 GTGAGGTTCTTCCCGCGGGTGAAGGCGAGATACGATTACAGCCTGTTGATTTTCATACTC 420
|||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||
Sbjct 361 GTGAGGTTCTTCCCGCGGGTGAAGGCTAGATACGATTACAGTCTGCTGATATTCATACTC 420
Query 421 ACCTTTGCGTTGATATCAGTGTCGGGATTCAGAGAGGAGCAGGTTGTAATGCTGACGCAT 480
|||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||
Sbjct 421 ACCTTTGCGTTGATATCAGTGTCGGGGTTCAGAGAAGAGCAGGTTGTAAAGCTGACCCAT 480
Query 481 AAGAGAATCTCCACAGTGATCATCGGAGGACTAAGTTGTGTCCTTATCTCCATCTTTGTC 540
|||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 481 AAGAGAATTTCCACAGTGATCATAGGAGGACTAAGTTGCGTCATTATCTCCATCTTTGTC 540
Query 541 TGCCCCGTCTGGGCCGGCCAAGATCTTCATTCACTCCTAGCCTCTAACTTTGAGAAACTC 600
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TGCCCTGTTTGGGCCGGCCAAGATCTTCATTCACTCATAGCCTCTAACTTTGAGAAACTC 600
Query 601 TCCTTTTTCTTGTTAG 616
|| |||||||||||||
Sbjct 601 TCATTTTTCTTGTTAG 616
> AT1G08440.1 | Symbols: | Aluminium activated malate transporter
family protein | chr1:2663027-2665343 FORWARD LENGTH=1506
Length=1506
Score = 885 bits (479), Expect = 0.0
Identities = 989/1231 (80%), Gaps = 51/1231 (4%)
Strand=Plus/Plus
Query 1 ATGgaaaaagtgagagagattgtgagagaagggagaagagt-ggcaaaagaagacccgag 59
||||| ||||||||||||||||||||||||||||| ||||| || |||||||| |||||
Sbjct 1 ATGGAGAAAGTGAGAGAGATTGTGAGAGAAGGGAGGAGAGTAGG-TAAAGAAGATCCGAG 59
Query 60 gagagTAGTTCACT-CGTTCAAAGTGGGTCTGGTTCTTGCCTTAGTCTCTTCCTTCTATT 118
|||||||| || | | ||||||||||| || | |||||| || ||||||||||||||||
Sbjct 60 AAGAGTAGTGCA-TGCTTTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATT 118
Query 119 ATTACCAACCTCTCTACGACAGCTTCGGTGTTAATGCAATGTGGGCTGTTATGACGGTTG 178
|||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||| || |
Sbjct 119 ATTATCAACCTCTCTACGACAACTTCGGTGTCAATGCAATGTGGGCTGTCATGACCGTCG 178
Query 179 TTGTCGTCTTCGAGTTCTCTGTTGGAGCCACGCTCGGTAAAGGTCTTAACAGAGTGGCGG 238
|||| || || || |||||||| || ||||| || || ||||| || || |||| | ||
Sbjct 179 TTGTTGTTTTTGAATTCTCTGTAGGGGCCACACTTGGGAAAGGACTAAATAGAGCAGTGG 238
Query 239 CAACACTATTTGCTGGGGGACTTGGAATCGGAGCTCATCACCTGGCTAGCATGTCTGGCC 298
||||| | | || || ||||| || || |||||||||||||| || || |||| || |
Sbjct 239 CAACATTGGTAGCAGGAGGACTAGGGATTGGAGCTCATCACCTAGCAAGTTTGTCGGGTC 298
Query 299 CAACAGGAGAACCCATTCTTCTCGCAATCTTTGTCTTTGTACAAGCTGCCTTGTCGACGT 358
|||||| ||||||||||||||| || |||||||||||||| | |||||| ||||||||||
Sbjct 299 CAACAGTAGAACCCATTCTTCTTGCCATCTTTGTCTTTGTCCTAGCTGCATTGTCGACGT 358
Query 359 TTGTGAGGTTCTTCCCGCGGGTGAAGGCGAGATACGATTACAGCCTGTTGATTTTCATAC 418
| |||||||||||||||||||||||||| ||||| ||||| | | ||||| ||||||
Sbjct 359 TCGTGAGGTTCTTCCCGCGGGTGAAGGCAAGATATGATTATGGGGTATTGATATTCATAT 418
Query 419 TCACCTTTGCGTTGATATCAGTGTCGGGATTCAGAGAGGAGC-AG--GTTGTAATGCTGA 475
| || || || |||||||||| ||||| || |||||||| | || ||| || ||
Sbjct 419 TGACGTTCGCACTGATATCAGTTTCGGGGTTTAGAGAGGA-CGAGATATTG-GAT-TTGG 475
Query 476 CGCATAAGAGAATCTCCACAGTGATCATCGGAGGACTAAGTTGTGTCCTTATCTCCATCT 535
||||||||||| | || |||||||| || |||||| | ||||| || |||||||| ||||
Sbjct 476 CGCATAAGAGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTGCTTATCTCTATCT 535
Query 536 TTGTCTGCCCCGTCTGGGCCGGCCAAGATCTTCATTCACTCCTAGCCTCTAACTTTGAGA 595
|||||||||| || ||||| || ||||| |||||||| ||||| ||||| |||||||| |
Sbjct 536 TTGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCTCCAACTTTGACA 595
Query 596 AACTCT-CCTTTTTCTTGTTAGATTTTGGGGACAAATATTGTGAAGTGGTAGAAAATGAT 654
|||| || || ||| ||| ||||||||| |||||| ||||| | ||| |||
Sbjct 596 CTCTCTCCCACTTCCTT-CAAGAATTTGGGGACGAATATTTTGAAGCGACAGAGGATGGG 654
Query 655 GACACCAAAGAGGTTGACAAACGA-AAAAAGG-ATTTTGACA-ACTATAAAAGTGTTCTC 711
|||| |||||| || || || || | |||| || |||| | | |||||||||||||||
Sbjct 655 GACATCAAAGAAGTGGA-GAA-GAGGAGAAGGAATCTTGAGAGA-TATAAAAGTGTTCTC 711
Query 712 AACTCAAAAAGCAATGAAGAATCTTTGGCTAATTTTGCGAAATGGGAACCTG-GTCACGG 770
||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||| ||
Sbjct 712 AACTCAAAAAGCAATGAAGAAGCTTTGGCTAATTTTGCAAAATGGGAACC-GCGTCATGG 770
Query 771 CCAATTCAGATTCCGGCATCCTTGGAAACAATATCTAGCTGTCGGTGAATTAATCCGACA 830
|||||| ||||| |||||||| |||| ||||||||| || || |||| |||| |||| ||
Sbjct 771 CCAATTTAGATTTCGGCATCCATGGAGACAATATCTTGCCGTGGGTGCATTACTCCGGCA 830
Query 831 ATGTGCTTACAGAATTCATACCCTGAATTCATCATATCTTAA-TGCAGATAATA-AGGTG 888
|| ||||||| ||||| || || |||||||| | ||| || | |||||| | || |
Sbjct 831 ATCTGCTTACCGAATTGATGCCTTGAATTCAA-ACATC--AACT-CAGATA-TGCAGATC 885
Query 889 TCAATTGATATTAAAAAGAAACTTGGAG-AACCATTGAGAAGAATGAGTTTGGAGTCTGG 947
|||| || |||||||||||| | | || ||||||| ||||||||||| | |||||| ||
Sbjct 886 CCAATGGACATTAAAAAGAAAATAG-AGGAACCATTAAGAAGAATGAGCTCGGAGTCGGG 944
Query 948 CAAAG-CGATGAAAGAAATGTCAATTTCATTGAAGAAAATGACCAA-ACCATCTTCTTCT 1005
|| | | ||||||||| |||| |||||||| ||||| ||||| || | ||||||||| |
Sbjct 945 GAA-GTCAATGAAAGAAGTGTCCATTTCATTAAAGAACATGAC-AATATCATCTTCTTTT 1002
Query 1006 GATCTTCATGTCCAAAACGCA-AGATCTGCCTCCAA-ATCACTCACCAACTT-ACTTAAT 1062
||| | ||||| |||| || | |||||| | ||| | | || ||| ||| ||||||
Sbjct 1003 GATATCCATGTAGTAAACTCACA-ATCTGCATGCAAGA-CTCTTTCCA-CTTTACTTAAA 1059
Query 1063 TCAGGCATCTTGAAA-GAAGTTGAGCCACTAGAATTGGTCTCACTTC-TGACCG-C-GAT 1118
||||||||||| ||| || |||||||| ||| || || ||||| || |||| | | | |
Sbjct 1060 TCAGGCATCTT-AAACGATGTTGAGCCTCTACAAATGATCTCA-TTAATGAC-GACAG-T 1115
Query 1119 TTC-CTTGCTCATCGATATTATAAACCTGACAGAGAAA-ATCTTGGAAGCCCTACATGAA 1176
||| || |||||| || ||| ||||| | || || ||| |||| ||| || |||||||
Sbjct 1116 TTCTCT-GCTCATTGACATTGTAAACTTAACCGA-AAAGATCTCAGAATCCGTACATGAG 1173
Query 1177 CTAGCATCCGCTGCAAAATTTAAGAACAAGA 1207
|| |||||||| |||||||||||||||||||
Sbjct 1174 CTTGCATCCGCAGCAAAATTTAAGAACAAGA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5