BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg344503 Length=444 Score E Sequences producing significant alignments: (Bits) Value AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 431 3e-120 AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 309 1e-83 AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 285 2e-76 > AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:4358652-4360099 REVERSE LENGTH=768 Length=768 Score = 431 bits (233), Expect = 3e-120 Identities = 307/341 (90%), Gaps = 12/341 (4%) Strand=Plus/Plus Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTTCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59 |||| ||||||| ||||||||||||||||| ||||||||||| || |||| |||||||| Sbjct 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488 Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGA 113 ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548 Query 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATC 173 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTC 608 Query 174 GCAGGTTGATTTTTC---AGATATAATGAATCTCGTCGTTGACGACAGTGACATAGATGA 230 |||| |||| ||||| |||||||||||||||||||||||| |||||||| |||||||| Sbjct 609 GCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 668 Query 231 AGACTGCTGTATTTGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTAA 290 |||| | || ||||||| ||| |||||||||||||||||| | |||||||| ||||||| Sbjct 669 AGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTAA 727 Query 291 GAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA 331 |||||||||||||||||||||||||| |||||||||||||| Sbjct 728 GAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768 > AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07526.3); Has 32 Blast hits to 32 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616 REVERSE LENGTH=264 Length=264 Score = 309 bits (167), Expect = 1e-83 Identities = 235/266 (88%), Gaps = 12/266 (5%) Strand=Plus/Plus Query 76 ATGTTGGATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAG 129 ||| |||||||||| |||||||||| | ||||||||||||| ||||||||||||| Sbjct 1 ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAG 60 Query 130 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGATTTTTCA 189 ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||| Sbjct 61 GAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCA 120 Query 190 GAT-ATA--ATGAATCTCGTCGTTGACGACAGTGACATAGATGAAGACTGCTGTATTTGG 246 || ||| ||||||||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct 121 GAAGATATTATGAATCTCGTCGTTGAAGAAAGTGAGATAGATGAAGACTGCAGTATTTGG 180 Query 247 GGGAAATCTAAGAGAAAAGGTAGCAGTATTTT-TCGAGAACCTAAGAGAAAGGAAGAGAC 305 || ||| |||||||||||||||| |||||||| | || ||| ||| |||||||||||||| Sbjct 181 GGAAAACCTAAGAGAAAAGGTAG-AGTATTTTCT-GAAAACATAAAAGAAAGGAAGAGAC 238 Query 306 TACAACAACCTGTGAAGCTGAGCTAA 331 ||||||||||| |||||||||||||| Sbjct 239 TACAACAACCTATGAAGCTGAGCTAA 264 > AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622 REVERSE LENGTH=435 Length=435 Score = 285 bits (154), Expect = 2e-76 Identities = 213/240 (89%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 83 ATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAGGAAATGG 136 ||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 8 ATACAAGCGATGGTCTTGAGTTTGCTTTTCTTGGAGAAAGTAATGGTACAAAGGAAATGA 67 Query 137 AATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGATTTTTC---AGATA 193 |||||||||||||| | ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 68 AATTAGTCTCTTCTGATGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATA 127 Query 194 TAATGAATCTCGTCGTTGACGACAGTGACATAGATGAAGACTGCTGTATTTGGGGGAAAT 253 | |||||||||||||||| |||||||| ||||||||||| ||| |||||||||| ||| Sbjct 128 TTGTGAATCTCGTCGTTGAAGACAGTGAGATAGATGAAGATTGCAGTATTTGGGGAAAAC 187 Query 254 CTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTAAGAGAAAGGAAGAGACTACAACAA 313 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 188 CTAAGAGAAAAGGTAGCAGTATTTTCCGAAAACCTAAGAGAAAGGAAGAGACTACAACAA 247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21112454580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5