BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344504
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27440.1 | Symbols: | pseudogene of rac GTPase activating p... 815 0.0
AT1G08340.1 | Symbols: | Rho GTPase activating protein with PA... 654 0.0
> AT2G27440.1 | Symbols: | pseudogene of rac GTPase activating
protein | chr2:11734803-11737335 FORWARD LENGTH=1124
Length=1124
Score = 815 bits (441), Expect = 0.0
Identities = 479/498 (96%), Gaps = 0/498 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGAAAACGAACGACAAGCCATGGACATTGGTCGCCCAACCAATATCTGTCAC 60
|||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||
Sbjct 232 ATGGCGGAGGAAAACGAACGGCATGCCATGGACATTAGTCGCCCAACCAATATCTCTCAT 291
Query 61 GTGGCTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTTGAG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 292 GTGGCTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTCGAG 351
Query 121 CCCGACGTACCCAAGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAG 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCTGACGTACCCAAGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAG 411
Query 181 TCGATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCGACGATACTCACGCTATTA 240
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 412 TCAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTACCATACTCACGCTATTA 471
Query 241 CAAAGCCGACTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CAAAGCCGGCTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGG 531
Query 301 GATAACAGTGAGGAAGAGTTTATTAGAGAAGAGTTAAACAAAGGAGTCCTACCAGAAGGC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GATAACAGTGAGGAGGAGTTTATTAGAGAAGAGTTAAACAAAGGAGTCCTACCAGAAGGC 591
Query 361 ATTGATATCCACTGTCTCGCCGGACTTATAAAGGCTTGGTTCAGAGAATTACCGAGAGGG 420
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 592 ATCGATATCCACTGTCTCGCCGGACTTATAAAGGCATGGTTCAGAGAGTTACCGAAAGGG 651
Query 421 GTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGCGAGTCAGAGGAGGATTTCGTG 480
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 652 GTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGTGAGTCAGGGGAGGATTTTGTG 711
Query 481 AAGGTTGTGAGACTCTTG 498
||||||||||||||||||
Sbjct 712 AAGGTTGTGAGACTCTTG 729
Score = 472 bits (255), Expect = 4e-132
Identities = 358/406 (88%), Gaps = 13/406 (3%)
Strand=Plus/Plus
Query 551 TTGTAGAGTTTGAAGATGTCAATAAGATGACCTCCCGTAATCTTGCTTTAGTCTTCGCAC 610
||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 727 TTGTAGAGTTTGAAGTTGTCAACAAGATGACCTCCCGTAATCTAGCTTTAGTCTTTGCAC 786
Query 611 CCAACATGTCTCAGATGGCAGATCCTTTAACAGCATTAATGTATGCGGTGCAAGTGATGA 670
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 787 CCAACATGTCCCAGATGGCAGATCCTTTAACAGCATTAATGTATGCAGTGCAAGTGATGA 846
Query 671 ACTTGCTGAGGAACCTCACAGACAAAACGCTCAGGGAGAGGAAAGTTGCGTCATCACATG 730
|||||||||||||||||||||||||||| ||||| || |||||| ||||| | ||| |||
Sbjct 847 ACTTGCTGAGGAACCTCACAGACAAAACACTCAGAGAAAGGAAAATTGCGACTTCAAATG 906
Query 731 TCA-ATCCTTCTGATGACAGAAGTGAAGCTGAAGATGATGATGTCGGAGAATATAATCAA 789
| | |||||| |||| ||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 907 T-AGATCCTTGTGATAACAGAAGTGAAGCTGAAGATGGTAATGTCGAAGAATATAATCAA 965
Query 790 GAAGAAGAAATGTATGTTCTTGAAGAAG-A-AGGA-GAAGATGTTGATGATCTGGACAAG 846
|||| |||||| |||||||||||||||| | |||| ||||| | || ||| | || |
Sbjct 966 GAAGTAGAAATATATGTTCTTGAAGAAGTAGAGGAAGAAGAAGGAGAAGATGTTGAT--G 1023
Query 847 GAAGACGAGATAATCGAAGAATCCGGGAGAATAACACTGCTTGCTGACGAACACAAACCA 906
| | || || ||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1024 -ATCT-G-GACAA-CGAAGAATCCGAGAGAATAACACTGCTTGCTGATGAACACAAACCA 1079
Query 907 TCAAGCACAGTGAATGCTAATGATCAAAAGAAA-AAGGAAACATGA 951
|||||| |||||||||||||||||| ||||||| ||| ||||||||
Sbjct 1080 TCAAGCGCAGTGAATGCTAATGATCGAAAGAAACAAG-AAACATGA 1124
> AT1G08340.1 | Symbols: | Rho GTPase activating protein with
PAK-box/P21-Rho-binding domain | chr1:2631068-2632871 FORWARD
LENGTH=1438
Length=1438
Score = 654 bits (354), Expect = 0.0
Identities = 583/694 (84%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 6 GGAGGAAAACGAACGACAAGCCATGGACATTGGTC-GCCCAACCAATATCTGTCACGTGG 64
||| || ||||| |||| ||||||||||||||| | | |||||||||||| | |||||||
Sbjct 219 GGAAGACAACGACCGACCAGCCATGGACATTGG-CGGTCCAACCAATATCCGCCACGTGG 277
Query 65 CTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTTGAGCCCG 124
|||| || || | ||||||||||||||| || || || ||||| ||||| || ||||| |
Sbjct 278 CTCACGTTACCTTCGATCGCTTCGATGGCTTCCTCGGCCTTCCCTCTGAGTTCGAGCCTG 337
Query 125 ACGTACCCA-AGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAGTCG 183
| || |||| | |||| ||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 338 ATGTCCCCAGAAAAGCTCCC-AGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGTCA 396
Query 184 ATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCC-GACGATACTCACGCTATTACA 242
||||||||||||||||||||||||||||| |||||||| | |||||| |||||| ||
Sbjct 397 ATGCAGTTATCATACGACTCGAGAGGGAACTGTGTTCCTGT-GATACTGTTGCTATTGCA 455
Query 243 AAGCCGACTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGGGA 302
||||| || || ||||||||||| ||||||| ||||||| | ||||||||||| || ||
Sbjct 456 GAGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAGA 515
Query 303 TAACAGTGAGGAAGAGTTTATTAGAGAAG-AG-TTAAACAAAGG-AGTCCTACCAGAAGG 359
||||| |||||||||||| |||| || | || |||| ||||| | || |||| || ||
Sbjct 516 GAACAGCGAGGAAGAGTTTGTTAGGGA-GCAGCTTAAT-AAAGGGA-TCATACCTGATGG 572
Query 360 CATTGATATCCACTGTCTCGCCGGACTTATAAAGGCTTGGTTCAGAGAATTACCGAGAGG 419
|||||| |||| ||| | ||||| ||||| ||||||||||||||||| | ||||||||
Sbjct 573 GATTGATGTCCATTGTTTAGCCGGTCTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAGG 632
Query 420 GGTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGCGAGTCAGAGGAGGATTTCGT 479
|||||| ||| |||| ||||| | |||||||||||||| |||||||| |||||||| ||
Sbjct 633 GGTACTGGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTGT 692
Query 480 GAAGGTTGTGAGACTCTTGCCGCAAACGGAAGCTTCTCTTCTGAATTGGGCAATCAATCT 539
|| ||||||||||| || || ||||| |||||||||||||| |||||||| ||||||||
Sbjct 693 CAAAGTTGTGAGACTTTTACCTCAAACAGAAGCTTCTCTTCTCAATTGGGCCATCAATCT 752
Query 540 AATGGCTGATTTTGTAGAGTTTGAAG-ATGTCAATAAGATGACCTCCCGTAATCTTGCTT 598
||||||||| || | ||||||| | |||| |||||||||| ||| ||||| |||||||
Sbjct 753 CATGGCTGATGTTATTCAGTTTGA-GCATGTTAATAAGATGAACTCTCGTAACCTTGCTT 811
Query 599 TAGTCTTCGCACCCAACATGTCTCAGATGGCAGATCCTTTAACAGCATTAATGTATGCGG 658
||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 812 TAGTCTTTGCCCCCAACATGTCTCAGATGGCAGACCCTTTAACTGCATTGATGTATGCGG 871
Query 659 TGCAAGTGATGAACTTGCTGAGGAACCTCACAGA 692
| ||||||||||| ||||| | || |||||||||
Sbjct 872 TCCAAGTGATGAAGTTGCTCAAGAGCCTCACAGA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5