BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg344577

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75820.1 | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich ...   346    2e-94
  AT4G34880.1 | Symbols:  | Amidase family protein | chr4:1661554...   259    3e-68


> AT1G75820.1 | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich 
receptor-like protein kinase family protein | chr1:28463462-28466971 
REVERSE LENGTH=3431
Length=3431

 Score =  346 bits (187),  Expect = 2e-94
 Identities = 223/240 (93%), Gaps = 4/240 (2%)
 Strand=Plus/Plus

Query  261   GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGACAACGAT--CCGTCGATGTTCTC  318
             ||||||||||||||||||||||||||||||||||||  ||||||  ||| ||||||||||
Sbjct  1634  GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTC  1693

Query  319   GATCAGATTTACCTCTCAAACAACTGGTTTTCTGGCGAGATTCCACCTGCGATCGGTAAT  378
             ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct  1694  GATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAAT  1753

Query  379   TTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAG  437
             ||||||||| |||||||||| |||||||||||||||||||||||||| ||  || |||||
Sbjct  1754  TTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAG  1812

Query  438   GGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGAACAATATCACCGG  497
              |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  1813  AGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGAACAACATCACCGG  1872


 Score =  180 bits (97),  Expect = 2e-44
 Identities = 115/123 (93%), Gaps = 3/123 (2%)
 Strand=Plus/Plus

Query  486   CAATATCACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCGA  545
             |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  2006  CAAT-TAACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGA  2064

Query  546   TCTCTCTTTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA-  603
             |||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| 
Sbjct  2065  TCTCTCTTTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAA  2124

Query  604   CGA  606
             |||
Sbjct  2125  CGA  2127


> AT4G34880.1 | Symbols:  | Amidase family protein | chr4:16615549-16617424 
FORWARD LENGTH=1401
Length=1401

 Score =  259 bits (140),  Expect = 3e-68
 Identities = 163/174 (94%), Gaps = 2/174 (1%)
 Strand=Plus/Plus

Query  55   ATCAGGCTTACCTCGACGTT-TGCTATCCAAGAAGCCACCATTGAAGACATCAGACTTGC  113
            |||||||||| ||| ||||| | | ||||||||||| |||||||||||||| ||| ||||
Sbjct  94   ATCAGGCTTAGCTCAACGTTCT-CGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGC  152

Query  114  TTTTAAGGAGAAACGACTAACATCAAAGCAGCTTGTTGAGTTGTATCTCGAAGCAATCTC  173
            ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  153  TTTCAACGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTC  212

Query  174  CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  213  CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT  266



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40036615159


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5