BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344590
Length=2454
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28260.1 | Symbols: | Telomerase activating protein Est1 | ... 2340 0.0
> AT1G28260.1 | Symbols: | Telomerase activating protein Est1
| chr1:9875600-9879174 REVERSE LENGTH=3211
Length=3211
Score = 2340 bits (1267), Expect = 0.0
Identities = 1586/1738 (91%), Gaps = 29/1738 (2%)
Strand=Plus/Plus
Query 32 GTTCGACATATGAGAAAATCTTTAAAAGCAATCTCCAACATGAAGAGCTTCAAGAAGTAG 91
||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 532 GTTCGACCTACGAGCAAATCTTTAAAAGCAATCTCCAACACGAAGAGCTTCAAGAAGTAG 591
Query 92 AGTTCTGCCTCTGGAAACTCCACTATAAGCACATCGATGAGTTTCGTAAAGGCCTTAAAA 151
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 AGTTCTGTCTCTGGAAACTCCACTATAAACACATCGATGAGTTTCGTAAAGGCCTTAAAA 651
Query 152 CAGATGATCATGTCAACCATATGAAAGCATTTAAGTTGTTTCTGTCAAAAGCCGCCGAGT 211
|| ||||||||| ||| |||||||||||||| |||||||||||||||||||| || ||||
Sbjct 652 CAAATGATCATGCCAAGCATATGAAAGCATTCAAGTTGTTTCTGTCAAAAGCAGCTGAGT 711
Query 212 TTTACCAGAGTCTGATTTCCAAAGTCAGAGGATATTACCGCAGACTCTCCGAGGAATCTG 271
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 712 TTTACCAGAATCTGATTTCCAAAGTCAGAGGATATTACCACAGACTCTCCGAGGAATCAG 771
Query 272 GAGAACAAAAAAGCAGATTCTTATGCCATCGTTTCTATATTTGCCTTGGAGATCTTCAAA 331
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 772 GAGAGCAAAAAAGCAGATTCTTATGCCATCGTTTCTACATTTGTCTTGGAGATCTTCAAA 831
Query 332 GGTATCAAGAACAATATCTGAAAACACATGAGCATCCTAATTGGTCAACTGCAGCTACTT 391
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 832 GGTATCAAGAACAATATCTGAAAGCACATGAACATCCTAATTGGTCAACTGCAGCTACTT 891
Query 392 ACTATCTTGAAGCTGCAAAATCTTGGCCTGATAGTGGAAATCCTCATAATCAGCTAGCTG 451
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 892 ACTATCTTGAAGCTGCAAAATCTTGGCCTGATAGTGGAAATCCTCATAACCAGCTAGCTG 951
Query 452 TATTGGCGACATATGTTGGTGATGAGTTCTTGGCTCTGTACCACTGTGTAAGAAGCTTAG 511
||||||| ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 952 TATTGGCCACATATGTTAGTGATGAGTTATTGGCTCTGTATCACTGCGTAAGAAGCTTAG 1011
Query 512 CTGTGAAAGAGCCTTTTCCTGGTGCTTCAAACAATCTACTTTTGTTGTTTGAGAAGAACA 571
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1012 CTGTGAAAGAGCCTTTTCCTGGTGCTTCGAACAATCTTCTTTTGTTGTTTGAGAAGAACA 1071
Query 572 GGTCTTCTCCTTTGAAATCTCTGTCTACTGACGCACAGTTTAACTTCTCAAACCCATTGG 631
|||| ||||| ||| | |||||||||||||| ||| ||||||||| || |||||||| |
Sbjct 1072 GGTCATCTCCATTGCAGTCTCTGTCTACTGATGCAGAGTTTAACTACTTAAACCCATCAG 1131
Query 632 AG-AGAAATTTTACTGTG-A--AA--A-A--TGTCAGAGAGGC--CCGCA-ATTTAATAG 679
|| | ||| ||| ||||| | || | | ||||| | | || | | | || | |
Sbjct 1132 AGAAAAAAGTTT-CTGTGAAGGAACGAGATTTGTCA-A-AAGCAAAAGGAGAACTAGTTG 1188
Query 680 -CTGAAGTTGATTTATGGCCCCTGGAAGTGCGGACAACCAGCTTCTTTTTCCTTAAATCC 738
| ||| |||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 1189 CCGGAA-TTGATTTATGGCCCCTGGTTGTTCGAACAACTAGCTTCTTTTTCCTTAAATCC 1247
Query 739 AGTTTTGATGAGTTTGGTTGTGCATTTGCATCAACTATAAGAGAAGTGGATGCAGCGTTT 798
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 1248 AGTTTTGATGAGTTTGGTCGGGCATTTGCATCAACTATAAGAGAACTGGATGCAGCGTTT 1307
Query 799 GCAGCAGATGATAGACATCTAGAAGTCATGTTGGAGTCTTATCAATTTATGGACACGTCG 858
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1308 GCAGCAGATGATAGAAATCTAGAAGCCATGTTGGAGTCTTATCAATTTATGGACACGGCG 1367
Query 859 AGAAAGGGACCTTATAAAATCCTTCAACTTGTTGC-GTTTTTCATCTTCATCTTCCATAA 917
||||||||||||||||||||||| ||| ||||||| |||||| |||| ||||||||| ||
Sbjct 1368 AGAAAGGGACCTTATAAAATCCTCCAAATTGTTGCGGTTTTT-ATCTACATCTTCCACAA 1426
Query 918 TTTAGCCGAGGTTAATGGA-CCAGACAACGTGAAAAAGGAAGTTAAGCTAACAAATTTAG 976
|||||| |||| ||||||| || |||| ||||||| ||||||||||||||||||||||||
Sbjct 1427 TTTAGCAGAGGCTAATGGATCC-GACATCGTGAAAGAGGAAGTTAAGCTAACAAATTTAG 1485
Query 977 CATTAACTATGGTGTTCATTATCATGGTGCGAGTTGTTGAGAGATGTTTGAAGACGAGTC 1036
|||||||||||||||| || |||||| ||||||||||||||||||||||||||| | ||
Sbjct 1486 CATTAACTATGGTGTTTATCGTCATGGGGCGAGTTGTTGAGAGATGTTTGAAGACAACTC 1545
Query 1037 CCTTGGATTCTTGCCCTCTCTTGCCTGCTCTACTTGTATTTCTAGACTACTTACCGTTTC 1096
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1546 CCTTGGATTCTTGCCCTCTCTTACCTGCTCTACTTGTATTTCTAGACTACTTACCGTTTC 1605
Query 1097 TGCTTGACAAGGT---AGAAGAAG-AG--GAATGCAGGTTTGATGAGAAAAACGAGACTG 1150
||||||||||||| |||||||| || |||||||||||||||||||| | | ||| ||
Sbjct 1606 TGCTTGACAAGGTAGAAGAAGAAGAAGAAGAATGCAGGTTTGATGAGAAGAGCAAGAGTG 1665
Query 1151 CAATATCTTACTTCTTTGGCAAACTCGTTGATTTCTTGAACCGGATAAAGGTGAAAGGCA 1210
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||
Sbjct 1666 CAATATCTTACTTCTTTGGCAAACTCGTTGATATCTTGAACCAGTTAAAGGTGAAAGACA 1725
Query 1211 AAAACTGCTCTGCTAAAACGTTGGTAGCTCTCTGGGAAGAACATGAACTGAAGTCCTTGG 1270
|||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1726 AAAACTGCCCTGCTAAAACGTTGTTAGCTCTCTGGGAAGATCATGAACTGAAGTCCTTGG 1785
Query 1271 CTCCTCTGGCCCCCATACATGTACTTTTGGATTTCTCAAGTAATATGGATCTTAGAGAGA 1330
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1786 CTCCTCTGGCTCCCATACATGCACTTTTGGATTTCTCAAGTAATATGGATCTTAGAGAGA 1845
Query 1331 GTTTTGATAGAGGGAAGGAAATTCGTCTTCAACGGATCATTAATTCCGCAATTGGGATCA 1390
||||||||||||||||||| |||||||||||||||| |||| ||| ||||||| ||||
Sbjct 1846 GTTTTGATAGAGGGAAGGAGCTTCGTCTTCAACGGATTATTAGTTCAGCAATTGATATCA 1905
Query 1391 CAAGTAGGCCGAAGAAGGGTTCTCAAAAGTGGCTATTCTTTGACAAGCAACGGTCTCATT 1450
||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1906 CAACTAGGCAGAAGAAGGGTTCTCAAAAGTGGCTATTCTTTGACAATCAACGGACTCATT 1965
Query 1451 TCTACACAACTTCGGGTGAATTGCAATGCAAAGAAGAGCTCTTTTATGGAAATGGAGAGG 1510
|||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||
Sbjct 1966 TCTACACAACTTCGGGTGAATTGCAAAGCAACGGAGAGCTCTTTCATGGAAATGGAGAGG 2025
Query 1511 GTGGTAACAGAAAATGTGTTACTATAGGACCTGTTGAAATCATTCCTTGTG-AGAATGAA 1569
|| | ||||||||||| |||||||| ||||| |||||||||||||||| || ||||||||
Sbjct 2026 GTAGAAACAGAAAATGCGTTACTATTGGACCAGTTGAAATCATTCCTT-TGGAGAATGAA 2084
Query 1570 GGATCTGTGCCTGTGGAAGAGGAAGAAGTCATTCTTCTCAAGCAGCTCGTAAGGTCTCAA 1629
||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2085 AGATCTGTTCCTGTAGAAGAGGAAGAAGTCATTCTTCTCAAGCCGCTCGTAAGGTGTCAA 2144
Query 1630 TCTGCTCCAATCTATTCTTCTGGCATTGCAACAAAGCCACTCAGCTCCGATAGCATAACT 1689
||||||||||| |||||||||||||||||| |||||||||| ||||| ||| ||| ||||
Sbjct 2145 TCTGCTCCAATATATTCTTCTGGCATTGCAGCAAAGCCACTTAGCTCTGATTGCACAACT 2204
Query 1690 TCAGGAAATCAAACAACTACGTCCGATGAAAGCCTAAGACATACCTTATCACTCATTG 1747
|||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||
Sbjct 2205 TCAGGAAATCAAACAACTACATCCAATGACAGCCTAAGACGTACCTTATCACTCATTG 2262
Score = 760 bits (411), Expect = 0.0
Identities = 566/638 (89%), Gaps = 22/638 (3%)
Strand=Plus/Plus
Query 1807 GACACGAACAAAGAGAATGGGCGACTCGGTTTAAGTAAACCAAACGGGTTGGGCCCTATT 1866
|||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 2376 GACAAGAACAAAGAGAAAGGACGACTCGGTTTAAGTAAACCAAACGGATTGGGCCCTATT 2435
Query 1867 GATGAAACAGGTCCTGTATCATCCTTTGATAGTCTCTCCATCAGTAACAGCACTGAG--- 1923
||||||||||||||||| ||| ||||||||||||||||||||| || |||||| |||
Sbjct 2436 GATGAAACAGGTCCTGTCTCAGCCTTTGATAGTCTCTCCATCAATAGCAGCACCGAGCAT 2495
Query 1924 -C--CGTCTTCATATTCACCTCCAACTCCGTCTGCTCCACTACTGCCTGAAGACGCTTCT 1980
| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2496 CCTGCGTCTTCCTATTCGCCTCCTACTCCGTCTGCTCCACTACTGCCTGAAGACGCTTCT 2555
Query 1981 TGGTTTCATAATGACGCTGGAAATAACAAAGCAGAGAGCTTCTATGACCACAGAAGATAT 2040
|||||||||||||||||| | | |||||||||||||||||||||||| || | | |||||
Sbjct 2556 TGGTTTCATAATGACGCTAGTACTAACAAAGCAGAGAGCTTCTATGATCAGACACGATAT 2615
Query 2041 ATGGAACTCTCTGGTTTCATGAAGCCATACACAAACCTACCAGTTGTTGAAATTTCTTCT 2100
||||||||| | ||| ||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 2616 ATGGAACTCCCCGGTATCATGAAGCCATACACAAACCCACCCTTTGTTGGGATTTCTTCT 2675
Query 2101 TCTGAATGGTTACGTCGGTACAGAGAAAGCCGGAATCTTGGACCAGCCTATTCGTATCAA 2160
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2676 TCTGAATGGTTACGTCGGTACAGAGAAAGTAGGAATCTTGGACCAGCCTATTCCTATCAA 2735
Query 2161 GCTCAGGGGACAAACGATTTGAGAAACTTTATGGCTCATGGGTCTTCCAAGGTCAGTCTT 2220
|||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2736 GCTCAGGGAACAAACAATTTGAGAAACTTTATGGCTCATGGCTCTTCCAAGTTCAGTCTC 2795
Query 2221 TTAGCTAGGTACGGGACACCAAACGAACAACCGATGATCTCTTCTGAAAACTCAACGTTT 2280
|||||||||||||||||||||||||| | ||| | || ||||||||||||||
Sbjct 2796 TTAGCTAGGTACGGGACACCAAACGA--------T--TCT-T-CTCAAAACTCAACGTTT 2843
Query 2281 TACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAGCA-AAGCTCTGCAACGGTGA 2339
||||||||||||||||||||||||||||||||||||||| | |||||| |||||| | |
Sbjct 2844 CACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAG-AGAAGCTCGGCAACGTTCA 2902
Query 2340 ACAATGCACAACAAATGCTTTTGGCTTCAGTGATGATCCCAAACCATTTCTTAGATATT- 2398
|||| ||||||||||| ||| |||||||||||| |||||| ||| |||||||||| ||
Sbjct 2903 ACAAAGCACAACAAATCCTTATGGCTTCAGTGACGATCCCGGACCGTTTCTTAGAT-TTC 2961
Query 2399 TGAGAGAGAAAGACTGGCTGAATGAGAATGGTCAGAGG 2436
||||||| ||||| |||||||||||||| |||||||||
Sbjct 2962 TGAGAGAAAAAGAGTGGCTGAATGAGAACGGTCAGAGG 2999
Score = 69.4 bits (37), Expect = 2e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1773 GTCTGAAAGTTTCAGCTTTACGCAAGGTCTTGAGGACACG 1812
||||||||||||||||||||||||||||||| ||||||||
Sbjct 2264 GTCTGAAAGTTTCAGCTTTACGCAAGGTCTTAAGGACACG 2303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121755170661
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5