BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344647
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28640.1 | Symbols: ATEXO70H5, EXO70H5 | exocyst subunit exo... 2643 0.0
> AT2G28640.1 | Symbols: ATEXO70H5, EXO70H5 | exocyst subunit exo70
family protein H5 | chr2:12284625-12286645 REVERSE LENGTH=1818
Length=1818
Score = 2643 bits (1431), Expect = 0.0
Identities = 1696/1825 (93%), Gaps = 14/1825 (1%)
Strand=Plus/Plus
Query 1 ATGATGCTACTATTTAAACCGTCTTCAACTCTAGGAAGAAGGTTAAAACCACGTCCATAC 60
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 1 ATGATGCTACTATTTAAACCGTCTTTAACTCTAGGAAGAAGGATAAAACCACGTCCATGC 60
Query 61 CAAAGCTTCTCTGAGTCTCTTCTAATGGATAGTATTGAAGCAGCTGAAACTCTCACACGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAGCTTCTCTGAGTCTCTTCTAATGGATAGTATTGAAGCAGCTGAAACTCTCACACGT 120
Query 121 AAATGGATATCTCCCA-ATCTATCTAGTTCATCTTCTTGCTCCCTCTCCTCGATTTTCTC 179
|||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGGATTTCT-CCAGATCTCTCTAGTTCATCTTCTTGCTCCCTCTCCTCGATTTTCTC 179
Query 180 CACCGAAAATCGCGTAGAAGGACGACGATTCATCGAGGTTATCAACAGCTTACAATACGC 239
|||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 180 CACCGATAATCGCGTAGAAGGACGAAGATTCGTCGAAGTTATCAACAGCTTACAATACGC 239
Query 240 GATTCAAGGAGTGGTCTTGGTGAATCCTGAATCACCAAAACTCACTCGAGCCCATAATCT 299
|||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||
Sbjct 240 AATTCAAGGAGTGGTCTTGGTGAATCCTGAATCACCAAAGCTTACTAGAGCGCATAATCT 299
Query 300 TGTAACAATCGCTATGAAACAGTTGGAAAAGGAGTTTTACCGGATTTTAAAATCGAATCG 359
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TGTGACAATCGCTATGAAACAGTTGGAAAAAGAGTTTTACCGGATTTTAAAATCGAATCG 359
Query 360 ACGGAATCTTGAT-C-----CCGAATCCGTTCGATCTTCCCCATCTTTCAATGCAAGGAA 413
||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 360 ACGGAATCTTGATCCGGAATCCGTATCCGTTCGATCTTCCCCATCTTTCAATGCAAGAAA 419
Query 414 TAAAGTGTCGATTTATTCCCAAGTTCCTAAATCTGAAGAAGCTGATGTTATGACGGATTT 473
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CAAAGTGTCTATTTATTCCCAAGTTCCAAAATCTGAAGAAGCTGATGTTATGACGGATTT 479
Query 474 GAAAATGATCTCTGATTGTATGATATCATCGGGTTACGAAAACGAATGTATCAAGATTTA 533
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GAAAATGATCGCTGATTGTATGATATCTTCGGGTTACGAAAACGAATGTATCAAGATTTA 539
Query 534 CAAGAAGATAAGAGGATCAATTATGGTTGAAGCATTGAGTAACTTAGGGTTTGAGAATCT 593
||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 540 CAAGAAGATTAGAGGATCAATCATGGTTAAAGCGTTGAGTAACTTAGGGTTTGAGAATCT 599
Query 594 AAGTTTTGGAAAGATTCAAAAATTGGATTGGGATAGTATGGAGAAGAACATCAAGAAATG 653
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGTTTTGGCAAGATTCAAAAATTGGATTGGGATAGTATGGAGAAGAACATCAAGAAATG 659
Query 654 GTTAGAAGCTACGAAAGTCCTTATCGCGAATTTGTTCGAGGGAGAAAGAATCCTTTGCGA 713
||||||||||||||||||||| ||| | || |||||||||||||||||||||||| ||||
Sbjct 660 GTTAGAAGCTACGAAAGTCCTAATCACAAACTTGTTCGAGGGAGAAAGAATCCTTAGCGA 719
Query 714 TCACGTTTTCTCGCCGTCTGTTTCCGTAGCCGAGTCTTGCTTCACGGAGATTACGTTAGA 773
||||||||||||||| || || || || || |||||||| ||||||||||| ||||||||
Sbjct 720 TCACGTTTTCTCGCCTTCAGTCTCTGTCGCGGAGTCTTGTTTCACGGAGATCACGTTAGA 779
Query 774 TAGTGCTTTAACTCTCTTTATCTTCCCAGTGAGTGTTGCAAGATGTaaaaaaaCCGTCGA 833
|||||||||||| |||||||||||||| |||||||| || ||||||| |||||||||||
Sbjct 780 TAGTGCTTTAACACTCTTTATCTTCCCCGTGAGTGTAGCTCGATGTAAGAAAACCGTCGA 839
Query 834 GAAAATCTTCCTTACTCTCGATATTTACCAAACGATATCGCAGCTTATGCCCCAAATTGA 893
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 840 GAAAATCTTCCTTACTCTCGACATTTACCAAACGATATCGCAGCTTATGCCTCAAATCGA 899
Query 894 AGAGATTTTCAGTTATGATTCGACTTCTGCAGTTCGATTACAAGCCGCTGATTCTCTTAA 953
||||||||| ||||||||||||||| |||| |||||| ||||||| ||||||||||| ||
Sbjct 900 AGAGATTTTTAGTTATGATTCGACTACTGCGGTTCGACTACAAGCTGCTGATTCTCTCAA 959
Query 954 GAATCTTGGTGAAGAGATTAATTCAATGGTGGCTGAATTCGAAGCTTCGATTACGAAAGA 1013
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAATCTCGGTGAAGAGATTAATTCAATGGTGGCTGAATTCGAAGCTTCGATTACGAAAGA 1019
Query 1014 ATCTTCGAAATCTCCAATCCCTGGAGGCGGAGTTCATCAGCTCACAAGGTACGTAATGAA 1073
|||||||||| | ||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 1020 ATCTTCGAAAACCCCAATCCGTGGAGGCAGTGTTCATCAGCTCACAAGGTACGTAATGAA 1079
Query 1074 TTTCATCGTTTTCCTCGCGGATTACCATGAATGTCTAGCTGGAGTTCTAACTGAATCGAC 1133
|||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 1080 TTTCATCGTTTTTCTCGCGGATTACCACGAATGTCTCGCTGGAGTTCTCACCGAATCGAC 1139
Query 1134 GTTGCCATTACCGGAAGATTACTTTGGGAACAATGACGAAGATAACAAGGACGGAGAAAC 1193
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1140 GTTGCCATTACCGGAAGATTACTTTGGGAACAATGACGAAGACAACAACGAAGGAGAAAC 1199
Query 1194 CAGATCTTCATCTTCTTCTACGGTAACCACAAGAATTGCATGGCTAATCCTCGTATTGCT 1253
| ||||||| | | || || | ||||||||||||||||||||||||||||||| |||||
Sbjct 1200 CGGATCTTC-T-T-CTACT--G-TAACCACAAGAATTGCATGGCTAATCCTCGTCTTGCT 1253
Query 1254 CTGTAAAATCGATACGAAATCTCGAATGTACAACGACATGGCTCTTTCATATCTCTTCCT 1313
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 CTGTAAAATCGACACGAAATCTCGAATGTACAACGACATGGCTCTTTCATACCTCTTCCT 1313
Query 1314 AGCCAACAATCTGCATTACGTGATCTCCAAGGTACGTACATCGAATCTGAGGGTTGTGCT 1373
|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 1314 AGCCAACAATCTGCATTACGTGATCTCCAAGGTACGTACATCGAATATGAGAGTCGTGCT 1373
Query 1374 TGGCGACGAATGGGTAACGAATCACGAAGGGAAAGTTACTCAATACCTCGAAAAATACGA 1433
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 TGGCGACGAATGGGTAACGAATCACGAAGGGAAAGTTACTCAGTACCTCGAAAAATACGA 1433
Query 1434 GAAAATCGCTTGGGGAGAAGTGATTATGTCGCTTTCCGATTCAAACGAAGAAATGCTCAA 1493
|||||| ||||||||||||||||| | ||| |||| |||||| ||||||||||||||| |
Sbjct 1434 GAAAATTGCTTGGGGAGAAGTGATAACGTCACTTTTCGATTCCAACGAAGAAATGCTCGA 1493
Query 1494 AGAAAACGTGGCGAAAGAGCGGTTAAAGCGGTTCAACGACGCGTTCGAGGAAGCGTTTCA 1553
|||| ||||||||||||||||||| | |||||||||||| | ||| ||||||||||||||
Sbjct 1494 AGAACACGTGGCGAAAGAGCGGTTGATGCGGTTCAACGAAGGGTTTGAGGAAGCGTTTCA 1553
Query 1554 GAAACAGAGCGAATGGGTAGCACCGGATTCGAAACTAAGAAACGATTTAAAAGATTCCGT 1613
||||||||| || ||||| | ||||||||||||||| ||| |||||||||||||||||||
Sbjct 1554 GAAACAGAGTGAGTGGGTCGTACCGGATTCGAAACTTAGAGACGATTTAAAAGATTCCGT 1613
Query 1614 GACGAAGAAGTTAACGTCTGTCGCGACGTCGTTTTATGCAAAGTACCACGTCGAAAATTG 1673
|||| |||||||||| |||| ||||| ||||||||| |||||||||||| ||||||||
Sbjct 1614 GACGGAGAAGTTAACAACTGTTACGACGACGTTTTATGAAAAGTACCACGTTGAAAATTG 1673
Query 1674 GGAGGAAGTCAGATTTGCCCCTGAAGATTTGGGTAATTACCTCTCTGACCTTTTCTTAGG 1733
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1674 GGAGGAAGTCAAATTTGCCCCTGAAGATTTGGATAATTACCTCTCTGACCTTTTCTTAGG 1733
Query 1734 TACGGGACGGTCGTGTATTATTGTTCCTTCGCTTAAACCATCGGACTCGGGACGTTCACT 1793
||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1734 TACGGGACGATCTTGTATTATCGTTCCTTCGCTTAAACAATCGGACTCGGGACGTTCACT 1793
Query 1794 CAAAAATTCAGAATCAGGACGTTGA 1818
||| ||||||||||||||||||||
Sbjct 1794 TAAAGATTCAGAATCAGGACGTTGA 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5