BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344649
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28650.1 | Symbols: ATEXO70H8, EXO70H8 | exocyst subunit exo... 2287 0.0
> AT2G28650.1 | Symbols: ATEXO70H8, EXO70H8 | exocyst subunit exo70
family protein H8 | chr2:12289152-12291045 REVERSE LENGTH=1894
Length=1894
Score = 2287 bits (1238), Expect = 0.0
Identities = 1569/1726 (91%), Gaps = 33/1726 (2%)
Strand=Plus/Plus
Query 1 ATGGTACTCTTCGCTTTATCAACGActtcttcttcttcttctAAGCTAAAACAACATTCA 60
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 65 ATGGTACTCTTCACTTTATCAACAACTTCTTCTTCTTCTTCTAAGCTAAAACAACATTCA 124
Query 61 CACCAAAGCTTTTTAGAGTCTCTAATGGAAGATAGTCTCGAAGACGCTGAATCTACCATA 120
||||||||||| | |||||||||||||||| | | | |||||||||||||||| | |||
Sbjct 125 CACCAAAGCTTCTCAGAGTCTCTAATGGAACACACTATCGAAGACGCTGAATCCATCATC 184
Query 121 AACCAATGGATTTCACCGGAACTCGTCGA-TGCTTCTTCTTTCTGCTTCATCTCATCGCT 179
| | |||||||||||| |||| |||| | | ||||||| ||||||||||||||||||||
Sbjct 185 CATCGATGGATTTCACCAGAACACGTCCACT-CTTCTTCCTTCTGCTTCATCTCATCGCT 243
Query 180 ATTTTCAACCGAAAACCGCGAAGAAGCCAAACGATTCATCAACACTGTAAACAACTTACA 239
||||||||||||||||||||||||||| |||||||||||| || |||| | || ||||||
Sbjct 244 ATTTTCAACCGAAAACCGCGAAGAAGCGAAACGATTCATCGACGCTGTTACCACCTTACA 303
Query 240 CTCCGGTATGATAAGACTAATCTCAGTAAATCCAACGTCAACGAAACTCGTTAAAGCCGA 299
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 304 CTCCGGTATGATAAGACTAATCTCAGTGAATCCAACGTCAATGAAACTCGTTAAAGCAGA 363
Query 300 GAATCTAATGCGAATCTCCATGAATCATCTCTCCAAAGAGTTTTACCGCATTCTTAAATC 359
|||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 364 GAATCTAATGCGTATCTCAATGACTCATCTCTCCAAAGAGTTTTACCGCATTCTCAAATC 423
Query 360 AAATCGACGCTACCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAGCTTCCGATTC 419
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GAACCGACGTTATCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAGCTTCCGATTC 483
Query 420 CGACTCCGA-T--G--T-------CATGAAAGATTTAAAGATGATCGCGGATTGTATGAT 467
||||||||| | | | |||| | ||| |||||||||||||||||||||||||
Sbjct 484 CGACTCCGATTCCGATTCCAACACCATGGATGATCTAAAGATGATCGCGGATTGTATGAT 543
Query 468 ATCATCCGGATATAGCAAAGAATGCTTTAAAATATACAAGAA-AATCCGTAAATCGATAA 526
|||||| || || |||||||||||||||||||| ||||| || ||||||||||||||| |
Sbjct 544 ATCATCTGGCTACAGCAAAGAATGCTTTAAAATCTACAA-AAGAATCCGTAAATCGATCA 602
Query 527 TCGTCGAAGCGATAAATCAACTTGGATTCGAGAATCTAACGTTTTCGCAGATACAGAAAC 586
| ||||||| |||| ||||| |||||||||||| |||||||||||||||| |||||||
Sbjct 603 TTAACGAAGCGTTAAACCAACTCGGATTCGAGAATTTAACGTTTTCGCAGATTCAGAAAC 662
Query 587 TTAAATGGGAAGTTATGGAGAAGAAGATACGAAAATGGTTACGAGTTACAACAAGAACTG 646
|| |||||||||||||||||||||||||||| ||||||||| || ||||||||| | |
Sbjct 663 TTGAATGGGAAGTTATGGAGAAGAAGATACGTAAATGGTTAAGAACAACAACAAGAGCAG 722
Query 647 TGAATACTCTGTTTTCCGGCGAACGAATCCTCTCCGATCACGTCTTCTCTTCATCATCAT 706
||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 723 TGAATACTCTGTTTTCCGGTGAACAAATCCTCTCCGATCATGTCTTCTCTTCATCATCAT 782
Query 707 CATCAATTCGTGAATCTGCATTTGCAGAAATCACATTACAAAGCGCTTTAGCTTTGTTCA 766
|| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 783 CAACAATTCGTGAATCTGCATTTGCAGAAATCACATCACAAACCGCTTTAGCTTTGTTCA 842
Query 767 CTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTTCTGACTCTCG 826
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 843 CTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTCCTCACTCTCG 902
Query 827 ATGTTTATCAAACAATCATCGATCTATTGCCTAAGATTGACGAACTCTTCAGCTCCGATT 886
||||||||||||| ||| | |||||||| |||||||| |||||||||| ||||| ||||
Sbjct 903 ATGTTTATCAAACGATCGTTGATCTATTACCTAAGATCAACGAACTCTTTAGCTCTGATT 962
Query 887 CAACCTCCACCGTCAGATCACAAATCGCTTTAAGTTTAGCAAATCTCAGAGAAGGTGTGA 946
||||||||||||| ||||||||| ||| ||||| |||| ||||||||||||||||||
Sbjct 963 CAACCTCCACCGTTAGATCACAAGTCGATTTAACATTAGTGAATCTCAGAGAAGGTGTGG 1022
Query 947 TTTCGATGATCGATGAATTCGAATCTTCGATTTCGAAAGAATCGTCGAAATCGTTAATCT 1006
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1023 TTTCGATGATCGACGAGTTCGAATCTTCGATTTCGAAAGAATCATCGAAATCGTTAATCT 1082
Query 1007 CCGGAGGTGGAATTCATCAATTGACGAGGTATGTGATGAATTTCATCGCCTTCCTCGCTG 1066
|||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 1083 CCGGTGGTGGAATTCATCAATTGACAAGGTATGTAATGAATTTCATCGTCTTCCTCGCTG 1142
Query 1067 ATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTTGTTACCTTCACCGGAAGAAG 1126
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1143 ATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTCGTTACCTTCACCGGAAGAAG 1202
Query 1127 --AAAG-CTCCGGTGATTCATCTCCGGTGAAATCGCGAATCGCGTGGCTGATTTTGTTCT 1183
|||| |||||| ||||| || ||||||||||| |||||| || || ||||||||||||
Sbjct 1203 AAAAAGACTCCGGAGATTCGTCACCGGTGAAATCACGAATCTCGAGGTTGATTTTGTTCT 1262
Query 1184 TACTCTGCAAAATCGACGCGAAGTCTCGTCTCTATAACGACGTAGCTCTCTCGTATCTGT 1243
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TACTCTGTAAAATCGACGCCAAGTCTCGTCTCTATAACGACGTAGCTCTCTCGTATCTGT 1322
Query 1244 TTTTGATTAATAATGTTAATTACGTTGTTGTTAAAGTCCGATCGTCGAATCTGAGGATGG 1303
||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| || ||
Sbjct 1323 TTTTGATTAATAACGTTAATTACGTTGTTGTTAAAGTCCGATCTTCGAATTTGAAGACGG 1382
Query 1304 TTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGGGAAGGTGAAGAAGTACGCCG-GAAAG 1362
||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||| |
Sbjct 1383 TTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGCGAAGGTGAAGAAGTATGTGGCGAA-G 1441
Query 1363 TTTGAGGAGATTGTTTGGGGAGAGGTGATGACGTCACTTTCTGATGATGTGACGACG--- 1419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1442 TTTGAGGAGATTGTTTGGGGAGAGATGATGACGTCACTTTCTGATGATGTGACGATGACT 1501
Query 1420 GCGGAGGAGAGG-ATTA-GACGGTTTAGTGATGGGTTTGAGGAAGCGTATAAGAGGCAAA 1477
|||||||| ||| |||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1502 GCGGAGGA-AGGGATTAAG-CGGTTTAGTGATGGGTTTGAGGAAGCGTATAAGAGACAAA 1559
Query 1478 CCGGTTGGGTTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCTGTGGGGATGA 1537
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1560 CCGGTTGGATTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCTGTTGGGATGA 1619
Query 1538 TGATTATACCGAGATATTC-GGGTTTTTGTGAAAGGTATCGGGTCGGGTTATTAGAGAAT 1596
||||||||||||||||||| ||||||| |||||||| | |||||| ||||||| ||||||
Sbjct 1620 TGATTATACCGAGATATTCCGGGTTTT-GTGAAAGGAACCGGGTCAGGTTATTGGAGAAT 1678
Query 1597 GTCGGATTTGCCCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTTTGGGTCTCGT 1656
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1679 GTCGGATTTGACCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTTTGGGTCTGGT 1738
Query 1657 GGATCAGGGAGT--T-CGTCTTTTCATTCTTCTGGTTCCTCTGTTT 1699
|||||||||||| | |||| |||||||||| ||||| |||||||
Sbjct 1739 GGATCAGGGAGTGGTTCGTCAGTTCATTCTTCGGGTTCTTCTGTTT 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5