BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344701
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29410.1 | Symbols: MTPB1, ATMTPB1 | metal tolerance protein... 1903 0.0
> AT2G29410.1 | Symbols: MTPB1, ATMTPB1 | metal tolerance protein
B1 | chr2:12616564-12617987 FORWARD LENGTH=1295
Length=1295
Score = 1903 bits (1030), Expect = 0.0
Identities = 1146/1201 (95%), Gaps = 12/1201 (1%)
Strand=Plus/Plus
Query 6 AAAATTCAAGATTTCTGAAGAAGACAGTTCTGGAATTCATATACGTTTTGCCTCTCCATC 65
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 45 AAAACTCAAGATTTCTGAAGAGGACAGCTCTGGAATTCATATACGTTTTGCCTCTCCATC 104
Query 66 TGATTCTCAGCTTATGGAATTGGAGCAAATCCGCATTTTGAAACCCGATGATGACGAAGA 125
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 105 TGATTCTCAGCTTATGGAATTGGAGCAAATCTGCATTTTGAAACCCGATGATGAGGAAGA 164
Query 126 AATGGAGTCACCATCACCATCAAAAACAGAGGAAATTTTAGGCGTGGTTCCTCTGTCTTG 185
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 165 AATGGAGTCACCATCACCATCGAAAACAGAGGAAAATTTAGGCGTGGTTCCTCTGTCTTG 224
Query 186 CGCTTTTACGAGACAAGAACATTGCGTTTCCGAGACGAAAGAACGCGAAGAATCGATTAG 245
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 225 CGCGTTTACGAGACAAGAACATTGCGTTTCCGAGACGAAAGAACGCGAAGAATCGACTAG 284
Query 246 AAGACTAAGCAGCCTTATCTTTCTTTACCTGATTGTTATGTCTGTACAGATTGTGGGAGG 305
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 285 AAGACTAAGCAGCCTTATTTTTCTTTACCTCATCGTTATGTCCGTACAGATTGTGGGAGG 344
Query 306 TTTTAAGGCAAATAGTCTTGCGGTTATGACGGATGCTGCGCATTTGTTGTCGGATGTGGC 365
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 345 TTTTAAGGCGAATAGTCTTGCGGTTATGACAGATGCTGCGCATTTGTTGTCGGATGTGGC 404
Query 366 GGGTTTGTGTGTCTCTTTGTTGGCTATCAAGGTCTCGAGCTGGGAAGCTAATCCGAGAAA 425
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 405 GGGTTTGTGTGTCTCTTTGTTGGCGATCAAGGTCTCGAGCTGGGAAGCTAATCCGCGAAA 464
Query 426 CTCGTTTGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTTCAGCTTATATG 485
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 465 CTCGTTCGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTTCAGCTCATATG 524
Query 486 GCTTGTCTCTGGAGTTATAATCCATGAAGCCATTCAAAGACTAGTTAGCAGAAGCAGAGA 545
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 GCTTGTCTCTGGAGTGATAATCCATGAAGCCATTCAAAGACTACTTAGCAGAAGCAGAGA 584
Query 546 GGTTAATGGTGAAATCATGTTTGGGATTTCGGCTTTCGGATTTTTCATGAACTTGGTTAT 605
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 585 GGTTAATGGAGAAATCATGTTTGGGATTTCGGCTTTCGGGTTTTTCATGAACTTGGTTAT 644
Query 606 GGTCCTTTGGTTAGGACATAACCATAGccaccacca-c-c-acca-c--caccaccatc- 658
|||||||||||||||||||||||||||||||||||| | | |||| | ||||| ||||
Sbjct 645 GGTCCTTTGGTTAGGACATAACCATAGCCACCACCACCACGACCATCATCACCATCATCA 704
Query 659 -aa-cat---catcatcatcaacatcatcaCAAGGAGGTGGTGGCTGAAGAGGAGGATGA 713
|| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 705 TAATCATAAACATCAACATCAACATCATCACAAGGAGGTGGTGGCAGAAGAGGAGGAGGA 764
Query 714 GGAAATGAATCCTTTAAAAGGTGAGAAATCATCGTCAAAGGAGATGAACATTAACATACA 773
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 765 GGAAATGAATCCTTTAAAAGGTGAGAAATCGTCTTCAAAGGAGATGAACATTAACATACA 824
Query 774 AGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTTGGTGTTATGATCGGTGG 833
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 825 AGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTAGGTGTTATGATTGGTGG 884
Query 834 AGGTATCATTTGGGTGAAACCGAAATGGGTTTTGGTTGATTTGATTTGTACTCTTGTTTT 893
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 885 AGGTATCATTTGGGTAAAACCAAAATGGGTTTTGGTTGATTTGATTTGCACTCTTGTTTT 944
Query 894 CTCTGCTTTTGCTCTTGCTGCTACTTTACCAATGCTCAAGAACATATTTGGAATACTGAT 953
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 945 CTCTGCTTTTGCTCTTGCTGCTACTCTACCAATTCTCAAGAACATATTTGGAATACTGAT 1004
Query 954 GGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTTAAGCGAATCGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTTAAGCGAATCGA 1064
Query 1014 TGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTTGGGAGAATCGTATT 1073
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1065 TGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTAGGGAGAATCGTATT 1124
Query 1074 ATCGTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATTATTGGTGTTAG 1133
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1125 GTCCTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATTACTGGTGTTAG 1184
Query 1134 AAATTTCTGTAGGAAATCTTGTGGGATTTATCATGTAACTGTTCAGGTTGAATCAGAGTA 1193
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1185 AAATTTCTGTAGGAAGTCTTATGGGATTTATCATGCAACTGTTCAGGTTGAATCAGAGTA 1244
Query 1194 G 1194
|
Sbjct 1245 G 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5