BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344719
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 2178 0.0
AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 1219 0.0
> AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein
with RNA-binding domain | chr2:12651923-12654336 FORWARD LENGTH=1718
Length=1718
Score = 2178 bits (1179), Expect = 0.0
Identities = 1328/1400 (95%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 1 ATGGCGCATAGAATACTGAGAGATCACGAGGCTGATGGATGGGAACGTTCTGATTTCCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 ATGGCGCATAGAATACTGAGAGATCACGAGGCTGATGGATGGGAACGTTCTGATTTCCCA 148
Query 61 ATCATCTGCGAGTCTTGTCTCGGTGACAATCCTTACGTGAGAATGACAAAGGCAAATTAT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 149 ATCATCTGTGAGTCTTGTCTCGGTGACAATCCTTACGTGAGAATGACAAAGGCGAATTAC 208
Query 121 GATAAGGAATGCAAGATCTGTACTCGGCCTTTCACGGTATTCAGGTGGCGACCTGGCCGA 180
||||| || || ||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 209 GATAAAGAGTGTAAGATCTGTACCCGGCCTTTCACGGTTTTCAGATGGCGACCTGGTAGG 268
Query 181 GATGCGAGATACAAGAAGACTGAAGTTTGTCAGACATGTTGCAAGCTGAAGAATGTGTGT 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 269 GATGCGAGATACAAGAAGACTGAAGTTTGTCAGACATGTTGCAAGTTGAAGAATGTGTGC 328
Query 241 CAAGTTTGTCTCTTGGATCTTGAGTATGGTCTTCCAGTTCAGGTCAGAGACACGGCGCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CAAGTTTGTCTCTTGGATCTTGAGTATGGTCTTCCAGTTCAGGTCAGAGACACGGCGCTC 388
Query 301 AACATTAGTACTCATGATTCTATCCCAAAAAGTGATGTGAACCGCGAGTTTTTCGCTGAA 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 389 AACATTAGTACTCATGATTCTATCCCAAAAAGTGATGTGAACCGAGAGTTTTTCGCTGAA 448
Query 361 GAGCATGATCGAAAGACGAGAGCTGGACTAGATTATGAGTCTTCTTTTGGGAAGATTCGA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GAGCATGATCGAAAGACGAGAGCTGGACTAGATTATGAGTCTTCTTTTGGGAAGATTCGG 508
Query 421 CCTAATGATACCATCCGTATGCTTCAAAGGACAACGCCATATTATAAAAGGAATCGAGCA 480
|| || |||||||| ||||||||||||||||||||||| || || |||||||| |||||
Sbjct 509 CCCAACGATACCATTCGTATGCTTCAAAGGACAACGCCTTACTACAAAAGGAACCGAGCT 568
Query 481 CATATTTGTAGTTTCTTCATTAGGGGAGAGTGTACAAGAGGTGCTGAGTGTCCATACCGT 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 569 CATATTTGTAGTTTCTTCATTAGGGGAGAGTGTACAAGAGGTGATGAGTGTCCATACCGT 628
Query 541 CATGAGATGCCTGAAACAGGGGAGTTATCCCAGCAGAACATTAAAGACCGTTACTATGGT 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 629 CATGAGATGCCTGAAACAGGAGAGTTATCCCAGCAGAACATTAAAGACCGTTATTATGGT 688
Query 601 GTAAATGATCCAGTTGCGTTGAAGTTACTTGGCAAGGCTGGTGAGATGGGCACTTTGGAA 660
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 689 GTAAACGATCCAGTTGCGTTGAAGTTACTTGGCAAGGCTGGGGAGATGGGTACTTTGGAA 748
Query 661 TCTCCAGAGGATCAAAGCATCAAAACGCTTTATGTTGGTGGGCTAAACTCGAGAGTCCTT 720
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 749 TCTCCAGAGGATCAAAGCATCAGAACGCTTTATGTTGGTGGGCTAAACTCGAGAGTCCTT 808
Query 721 GAGCAAGACATTCGCGATCAATTCTACGCCTATGGAGAAATCGAATCCATTAGAATCTTG 780
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 809 GAGCAAGACATTCGTGATCAATTCTACGCCCATGGAGAAATCGAATCCATCAGAATCTTG 868
Query 781 GCTGAGAAAGCATGTGCGTTTGTCACATACACAACCCGAGAAGGCGCAGAGAAAGCAGCA 840
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 869 GCTGAGAAAGCATGTGCGTTTGTCACTTACACAACCCGAGAAGGAGCAGAGAAAGCTGCA 928
Query 841 GAAGAGCTCAGTAACAGGCTAGTTGTCAACGGTCAGAGGCTAAAACTCACATGGGGAAGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GAAGAGCTCAGTAACAGGCTAGTTGTCAACGGTCAGAGGCTAAAACTCACATGGGGAAGA 988
Query 901 CCTCAGGTTCCCAAACCTGATCAAGATGGTTCTAACCAACAGGGCAGTGTGGCTCATAGT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CCTCAGGTTCCCAAACCTGATCAAGATGGTTCTAACCAACAGGGCAGTGTGGCTCATAGT 1048
Query 961 GGTTTACTACCTCGAGCAGTTATATCTCAGCAACAGAATCAACCTCCA--A-TGC-AGCA 1016
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||
Sbjct 1049 GGTTTACTACCTCGAGCAGTTATATCTCAGCAACAGAATCAACCTCCACCAATGCTA-CA 1107
Query 1017 ATACTATATGCACCCACCACCACCACAACCTCCTCATCAAGACAGACCCTTTTACCCATC 1076
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1108 ATACTATATGCACCCACCACCACCACAACCTCCTCATCAAGACAGACCATTTTACCCATC 1167
Query 1077 AATGGACCCTCAGAGAATGGGTGCAGTCATTTCGTCCCAAGACAGCGGTTCAAGCACCAG 1136
||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||
Sbjct 1168 AATGGACCCTCAGAGAATGGGTGCAGTTAGTTCGTCCAAAGAAAGCGGTTCAAGCACCAG 1227
Query 1137 TGACAACAGAGGAGCTTCTTCTTCTTCTTACTCGATGCCACCACATGGCCACTATCCGCA 1196
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 1228 TGACAACAGAGGAGCTTCTTCTTCTTCTTACACTATGCCACCACATGGCCACTATCCTCA 1287
Query 1197 GCACCAGCCATACCCACCACCACCATATGGAGGATATATGCAGCCACCTTACCAGCAGTA 1256
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1288 GCACCAGCCATACCCGCCACCATCATATGGAGGATATATGCAACCACCTTACCAGCAGTA 1347
Query 1257 TCCTCCTTACCAACATGGCC---CACCGCAAGCTGCTCATCCTTCCCCGCAACAACC-GG 1312
|||||||||||| ||||||| ||| ||||||| |||| || ||| |||||||| ||
Sbjct 1348 TCCTCCTTACCACCATGGCCATTCACAACAAGCTGATCATGATTACCCACAACAACCAGG 1407
Query 1313 TTCCTGGTTCAAGGCCCAATGCTCCTCCTCCAAGTTCAGTCGCTGCTCCACCACCTGACT 1372
| || ||||||||||| ||| |||| | ||||||||||||| ||||||||||||||||||
Sbjct 1408 TCCC-GGTTCAAGGCCTAATCCTCCACATCCAAGTTCAGTCTCTGCTCCACCACCTGACT 1466
Query 1373 CTGTGTCTGCAGCACCTTCA 1392
||||||||||||||||||||
Sbjct 1467 CTGTGTCTGCAGCACCTTCA 1486
> AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein
with RNA-binding domain | chr1:2260389-2262865 REVERSE LENGTH=1689
Length=1689
Score = 1219 bits (660), Expect = 0.0
Identities = 1027/1198 (86%), Gaps = 49/1198 (4%)
Strand=Plus/Plus
Query 1 ATGGCGCATAGAATACTGAGAGATCACGAGGCTGATGGATGGGAACGTTCTGATTTCCCA 60
||||| || ||||||||||||||||| || || |||||||||||||| || |||||||||
Sbjct 71 ATGGCTCACAGAATACTGAGAGATCATGAAGCCGATGGATGGGAACGCTCCGATTTCCCA 130
Query 61 ATCATCTGCGAGTCTTGTCTCGGTGACAATCCTTACGTGAGAATGA-CAAAGGCAAATTA 119
||||||||||| ||||||||||||||||| || |||||| |||||| |||| || |||||
Sbjct 131 ATCATCTGCGAATCTTGTCTCGGTGACAACCCCTACGTGCGAATGACCAAA-GCGAATTA 189
Query 120 TGATAAGGAATGCAAGATCTGTACTCGGCCTTTCACGGTATTCAGGTGGCGACCTGGCCG 179
|||||||||||||||||| ||||| || ||||||||||| || |||||||||||||||||
Sbjct 190 TGATAAGGAATGCAAGATATGTACACGACCTTTCACGGTGTTTAGGTGGCGACCTGGCCG 249
Query 180 AGATGCGAGATACAAGAAGACTGAAGTTTGTCAGACATGTTGCAAGCTGAAGAATGTGTG 239
||||| ||||||||||| || ||| |||||||||| || |||||| |||| ||||| ||
Sbjct 250 GGATGCTAGATACAAGAAAACCGAAATTTGTCAGACTTGCTGCAAGTTGAAAAATGTTTG 309
Query 240 TCAAGTTTGTC-TCTTGGATCTTGAGTATGGTCTTCCAGTTCAGGTCAGAGACACGGCGC 298
|||||| |||| || |||||||||||||||||||||||||||| || |||||||| || |
Sbjct 310 TCAAGTCTGTCTTC-TGGATCTTGAGTATGGTCTTCCAGTTCAAGTAAGAGACACAGCAC 368
Query 299 TCAACATTAGTACTCATGATTCTATCCCAAAAAGTGATGTGAACCGCGAGT-TTTTCGCT 357
||||||||||||||||||| |||||||| ||||||||||| ||| | |||| |||| |||
Sbjct 369 TCAACATTAGTACTCATGACTCTATCCCTAAAAGTGATGTCAACAGAGAGTATTTT-GCT 427
Query 358 GAAGAGCATGATC-GAAAGACGAGAGCTGGACTAGATTATGAGTCTTCTTTTGGGAAGAT 416
||||||||||| | | ||| | ||||||||||| |||||||| ||||| || ||||||||
Sbjct 428 GAAGAGCATGA-CAGGAAGGCTAGAGCTGGACTGGATTATGAATCTTCATTCGGGAAGAT 486
Query 417 TCGACCTAATGATACCATCCGT-ATGCTTCAAAGGACAACGCCATATTATAAAAGGAATC 475
||||| |||||||| || | | ||||||||| ||||| || || ||||| ||||| |
Sbjct 487 GCGACCCAATGATACTAT-TTTAAAGCTTCAAAGAACAACACCGTACTATAAGAGGAACC 545
Query 476 GAGCACATATTTGTAGTTTCTTCATTAGGGGAGAGTGTACAAGAGGTGCTGAGTGTCCAT 535
|||||||| |||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 546 GAGCACATGTTTGTAGTTTCTTCATCAGGGGTGAGTGTACAAGAGGTGCTGAATGTCCAT 605
Query 536 ACCGTCATGAGATGCCTGAAACAGGGGAGTTATCCCAGCAGAACATTAAAGACCGTTACT 595
|||| ||||||||||| |||||||| ||| |||||||||| ||||| ||||||||||| |
Sbjct 606 ACCGGCATGAGATGCCCGAAACAGGAGAGCTATCCCAGCAAAACATAAAAGACCGTTATT 665
Query 596 ATGGTGTAAATGATCCAGTTGCGT-TGAAGTTACTTGGCAAGGCTGGTGAGATGGGCACT 654
||||||| |||||||||||||| | ||||||| |||||||| ||||||||||||||||||
Sbjct 666 ATGGTGTTAATGATCCAGTTGC-TATGAAGTTGCTTGGCAAAGCTGGTGAGATGGGCACT 724
Query 655 TTGGAATCTCCAGAGGATCAAAGCATCAAAACGCTTTATGTTGGTGGGCTAAACTCGAGA 714
|||||||| ||||| ||| ||||||||||||| ||||| || ||||| || |||||||||
Sbjct 725 TTGGAATCGCCAGACGATGAAAGCATCAAAACCCTTTACGTCGGTGGACTTAACTCGAGA 784
Query 715 GTCCTTGAGCAAGACATTCGCGATCAATTCTACGCCT-ATGGAGAAATCGAATCCATTAG 773
| || ||||| ||||| || || |||||||||| || |||||||||| ||||| || ||
Sbjct 785 ATTCTCGAGCAGGACATACGAGACCAATTCTACG-CTCATGGAGAAATTGAATCTATCAG 843
Query 774 AATCTTGGCTGAGAAAGCATGTGCGTTTGTCACATACACAACCCGAGAAGGCGCAGAGAA 833
||||||||| || ||||| ||||| |||||||||||||||| ||| ||||| ||||||||
Sbjct 844 AATCTTGGCCGATAAAGCCTGTGCATTTGTCACATACACAAGCCGTGAAGGTGCAGAGAA 903
Query 834 AGCAGCAG-AAGAGCTCAGTAACAGGCTAGTTGTCAACGGTCAGAGGCTAAAACTCACAT 892
|| || | |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 904 GGCTGC-GCAAGAGCTCTCCAACAGGCTAGTCATCAACGGTCAGAGGCTAAAACTCACAT 962
Query 893 GGGGAAGACCTCAGGTTCCCAAACCTGATCAAGATGGTTCTAACCAACAGGGCAGTGTGG 952
|||||||||| || || ||||||||||||||| | |||||||||||| ||||||
Sbjct 963 GGGGAAGACC-CA-------AA-CCTGATCAAGATGGTGCAAACCAACAGGGCGGTGTGG 1013
Query 953 CTCATAGTGGTTTACTACCTCGAGCAGTTATATCTCAGCAACAGAATCAACCTCCA--A- 1009
|||||||||| |||||||||||||| |||||||||||||| || |||||||| ||| |
Sbjct 1014 CTCATAGTGGGTTACTACCTCGAGCCGTTATATCTCAGCAGCACAATCAACCCCCACCAA 1073
Query 1010 TGCAGCAATACTATATGCACCCACCACCACCACAACCTCCTCATCAAGACAGACCCTT-T 1068
||||||| ||||||||||||||||||||| | |||| | | |||| ||| || |
Sbjct 1074 TGCAGCAGTACTATATGCACCCACCACCAGCT-AACC-----A--A-GACAAACC-TTAT 1123
Query 1069 TACCCATCAATGGACCCTCAGAGAATGGGTGCAGTCATTTCGTCCCAAGA--CAGC-GGT 1125
||||||||||||||||| ||||||||||||||||||||||| ||||||| | | |||
Sbjct 1124 TACCCATCAATGGACCCACAGAGAATGGGTGCAGTCATTTCAACCCAAGAGGCTGGTGGT 1183
Query 1126 TCAAGCACCAGTGACAACAGA-GGAGCTTCTTCTTCTTCTTAC-TCGATGCCACCACA 1181
|||||||| ||| |||| | |||||||| |||||||||||| | |||||| |||||
Sbjct 1184 TCAAGCAC---TGAGAACA-ACGGAGCTTCATCTTCTTCTTACAT-GATGCCTCCACA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5