BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344762
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30040.1 | Symbols: MAPKKK14 | mitogen-activated protein kin... 1694 0.0
AT1G07150.1 | Symbols: MAPKKK13 | mitogen-activated protein kin... 453 2e-126
> AT2G30040.1 | Symbols: MAPKKK14 | mitogen-activated protein kinase
kinase kinase 14 | chr2:12821710-12823169 FORWARD LENGTH=1460
Length=1460
Score = 1694 bits (917), Expect = 0.0
Identities = 1133/1234 (92%), Gaps = 27/1234 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAACAGAACATTATCACAAACA------CTTC-T--TCTTCTTGGATTCGTGGT 51
||||||||||||||||||||| |||||| |||| | ||||||||||||||||||
Sbjct 38 ATGGAGAAACAGAACATTATCTCAAACACTTCTTCTTCTTCGTCTTCTTGGATTCGTGGT 97
Query 52 TCTTGTATTGGACGAGGTTGTTTTGGTTCCGTTAGCAAAGCTTTGAGTAAAATCGACGGT 111
|||||| ||||| |||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 98 TCTTGTGTTGGAAGAGGTTGTTTTGGTACAGTAAGCAAAGCTTTGAGTAAAATCGACGGT 157
Query 112 GGAGTTTTCGCCGTGAAGTCTATAGACCTCTCCACGTGTCTTCCTTCTCAAGCCGAGTCG 171
||| |||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||
Sbjct 158 GGACTTTTCGCCGTGAAGTCGATAGATCTCGCCACGTGTCTTCCTTCTCAAGCAGAGTCG 217
Query 172 TTAGAGAACGAAATCGTTATTCTCCGGTCGATGAAGTCTCATCCAAACATAGTGAGGTTT 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 218 TTAGAGAACGAAATCGTTATTCTACGGTCGATGAAGTCTCATCCAAACATAGTGAGGTTT 277
Query 232 CTCGGCGATGACGTTTCTAAAGAAGGAACGACGTCGTTTCGTAATCTTCATTTAGAGTAT 291
||||| ||||| || ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 278 CTCGGTGATGATGTGTCTAAAGAAGGAACGGCGTCGTTTCGAAATCTTCATTTAGAGTAT 337
Query 292 TCACCGGAAGGTGACGTGGCAAACGGTGGAATTGTCAACGAAACGCTTCTCCGGCGTTAC 351
||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||||||
Sbjct 338 TCACCGGAAGGTGACGTTGCTAACGGTGGAATCGTTAACGAAACGCTTCTCAGGCGTTAC 397
Query 352 GTGTGGTGTCTTGTCTCTGCTCTGAGTCACGTTCATGCTAACGGAATTGTTCACTGCGAC 411
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 398 GTGTGGTGTCTTGTCTCTGCTTTGAGTCACGTTCATTCTAACGGAATTGTTCACTGCGAC 457
Query 412 GTTAAATCTAAGAACGTTCTTGTGTTTAACGGTAGTAGCTCCGTTAAGCTGGCGGATTTT 471
||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 458 GTTAAATCTAAGAACGTTCTTGTTTTTAACGGTGGTAGCTCCGTTAAGCTAGCGGATTTT 517
Query 472 GGATCGGCGGTTGTGTTTGAGAAATCGACGGTTCAGGCTTCGCCACGTGGAAGTCCGCTT 531
||||||||||||| |||||||||||| ||| |||| | ||||||||||||||||||||||
Sbjct 518 GGATCGGCGGTTGAGTTTGAGAAATCTACGATTCATGTTTCGCCACGTGGAAGTCCGCTT 577
Query 532 TGGATGGCTCCGGAGGTGATTAGACGTGAGTACCAAGGACCGGAGAGTGACGTGTGGTCT 591
|||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 578 TGGATGGCTCCGGAGGTGGTTAGAAGAGAGTACCAAGGACCGGAGAGTGACGTGTGGTCT 637
Query 592 TTAGGATGTACGGTCATAGAGATGCTCACCGGAAAACCAGCCTGGGAAGATCACGGTTTC 651
||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 638 TTAGGGTGTACCGTCATCGAGATGCTCACCGGAAAACCAGCTTGGGAAGATCACGGTTTC 697
Query 652 GACTCGCTGAGTCGGATCGGGTTTTCTAACGAGTTGCCATTTATTCCGGCGGGATTATCG 711
||||||||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||||
Sbjct 698 GACTCGCTGAGTCGGATCGGGTTCTCTAACGATTTGCCTTTTATTCCGGTGGGGTTATCG 757
Query 712 GAACTCGGGAGAGATTTCTTGGAGAAATGCTTGAAACGTGATCGGAGTCAGCGGTGGAGT 771
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 758 GAACTCGGGAGAGATTTCTTAGAGAAATGCTTGAAACGTGATCGGAGTCAGCGTTGGAGC 817
Query 772 TGTGATCAGCTTTTGCAGCATCCGTTTCTGTTTCAAGATCATCATGACTCGTTCTTGACC 831
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 818 TGTGATCAGCTCTTGCAGCATCCGTTTCTGTGTCAAGATCATCATGACTCGTTCTTCACT 877
Query 832 GAGTCGTCTCCGCGTTGCGTTCTTGACTGGGTCAACTCGGAGTTCGACGAAGAAGAAGAG 891
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 878 GAGTCGTCTCCGCGTTGTGTTCTTGACTGGGTCAACTCGGAGTTTGACGAAGAAGAAGAG 937
Query 892 AGCAACGAGTGGAGACCAGAATCCATGGTTTCAGCAATGGCAAGGATAAGTAAATTAGCG 951
||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 938 AGCGACGAATGGAGACCAGAATCCATGGTTTCGGCGATGGCAAGGATAAGTAAATTAGCT 997
Query 952 ATAACCGGAGGGGCAAATTGGGAATCTAATGGTTGGACTGAGGTTAGAGACACTTCCGAA 1011
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 ATAACCGGAGGAGCAAATTGGGAATCTAATGGTTGGACTGAGGTTAGAGACACTTCCGAA 1057
Query 1012 GAGTCAGGGGCAATAAAGGAAGTTCCTGTTTCAACAAGGGTAGAATTGGGAT-TTAACAC 1070
||||||| ||||| ||||||||||| |||||| ||||||||||||||| || ||| ||
Sbjct 1058 GAGTCAGAGGCAAAAAAGGAAGTTCTTGTTTCTCCAAGGGTAGAATTGGAATCTTA-CAT 1116
Query 1071 ATCATCGGAGTCGTCGAGCGATGATTTCGTAAGACAGCCG-GAAAATGAAGAGTCGGCGA 1129
||||| ||||||||| |||||||||| ||||||||| ||| | || ||||||||||||||
Sbjct 1117 ATCATTGGAGTCGTCAAGCGATGATTCCGTAAGACAACCGAGGAA-TGAAGAGTCGGCGA 1175
Query 1130 CGGAGTTGGCGTTGGCTA-TGACGTGTGAAGTAAT-T-GT-----AT--T---GGTGGTA 1176
|||||||||||| ||| | |||||||||||| ||| | || || | |||||||
Sbjct 1176 CGGAGTTGGCGTCGGC-AGTGACGTGTGAAGCAATATTGTTGGTGATGATATTGGTGGTA 1234
Query 1177 GAGAATATTCAGATATATGCCACGTTTTACACCA 1210
||||||||||| ||||||||||||||||||||||
Sbjct 1235 GAGAATATTCAAATATATGCCACGTTTTACACCA 1268
> AT1G07150.1 | Symbols: MAPKKK13 | mitogen-activated protein kinase
kinase kinase 13 | chr1:2194279-2195796 REVERSE LENGTH=1518
Length=1518
Score = 453 bits (245), Expect = 2e-126
Identities = 828/1098 (75%), Gaps = 86/1098 (8%)
Strand=Plus/Plus
Query 31 TCTTCTTCTTGGATTCGTGGTTCTTGTATTGGAC-GAGGTTGTTTTGGTTCCGTTAGCAA 89
||||||| |||| |||||||| | ||||| || | |||||||||| ||| | ||||| |
Sbjct 76 TCTTCTTTTTGGGTTCGTGGTGCGTGTATCGG-CAGAGGTTGTTTCGGTGCAGTTAGTAC 134
Query 90 AGCTTTGAGTAAAATCGACGGTGGAGTTTTCGCCGTGAAGTCTATAGACCTCTCCACGTG 149
|| | || |||| | |||||| ||||||||||||||| || | || ||| ||||| |
Sbjct 135 GGCGATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAG 194
Query 150 TCTTCCTTCTCAAGCCGAGTCGT-TAGAGAACGAAATCGTTAT-TC-TCCGGTCGATGAA 206
||| || ||||| | ||||| | | ||||||||||| | | || |||| ||| | ||
Sbjct 195 TCTCCCCACTCAATCAGAGTC-TCTCGAGAACGAAAT--ATCTGTCTTCCGCTCGCTAAA 251
Query 207 GTCTCATCCAAACATAGTGAGGTTTCTCGGCGA-TGACGTTTCTAAAGAAGGAACGACGT 265
| |||| || |||| |||| |||||||||||| || || || |||||||||||||||
Sbjct 252 GCCTCACCCTTACATCGTGAAGTTTCTCGGCGACGGA-GTCTCGAAAGAAGGAACGACGA 310
Query 266 CGTTTCGTAATCTTC-ATTTAGAGTATTCACCGGAA-GGTGACGT-G---G-CA-A-A-- 314
||||| | |||| || | |||||||| || || || |||||||| | | || | |
Sbjct 311 CGTTTAGGAATC-TCTACTTAGAGTA-TCTCCCAAACGGTGACGTGGCTAGTCACAGAGC 368
Query 315 CGGTGGAATTGTC--A-ACGAAACGCTTCTCCGGCGTTACGTGTG-GTGTCTTGTCTCTG 370
||| |||| || | |||| || || |||| ||||||| | | ||||||||||||||
Sbjct 369 CGGAGGAAAAATCGAAGACGAGACTCTGCTCCAGCGTTACACG-GCGTGTCTTGTCTCTG 427
Query 371 CTCTGAGTCACGTTCA-TGCT-AACGGAATT-GTTCACTGCGACGTTAAATCTAAGAACG 427
|||| | ||||| || | || || || ||| |||||||||||||| || | | ||||
Sbjct 428 CTCTCCGCCACGTACACT-CTCAA-GG-ATTCGTTCACTGCGACGTCAAGGCGAGGAAC- 483
Query 428 TTCTTGTGTTTAACGGTAGTAGCTCC---GTTAAGCTGGCGGATTTTGGATCGGCGGTTG 484
|| | | | | | | |||||| || ||| | || |||||||| ||||| |||
Sbjct 484 ATCCT-CG--TCA-GCCA-AAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGC-GTTC 537
Query 485 TG-TTTGAGAAATCGACGGTTCAGGCT-TCGCCACGTGGAAGTCCGCTTTGGATGGCTCC 542
| | | | | ||| || || | | |||||||||||||||||||||||||||||||
Sbjct 538 AGAATCCACACACCGAGGGCTC-TGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCC 596
Query 543 GGAGGTGATTAGACGTGAGTACCAAGGACCGGAGAGTGACGTGTGGTCTTTAGGATGTAC 602
||||||||| ||||| ||||||||||| |||||||||||||| |||||| | || || ||
Sbjct 597 GGAGGTGATCAGACGAGAGTACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCAC 656
Query 603 GGTCATAGAGATGCTCACCGGAAAACCAGCCTGGGAAGATCACGGT-TTCGACTCGCTGA 661
| |||| |||||| |||| || ||||| || |||||||| ||||| || ||||||||||
Sbjct 657 GATCATCGAGATGTTCACTGGGAAACCCGCTTGGGAAGACCACGGAATT-GACTCGCTGA 715
Query 662 GTCGGATCGGGTTT-TCTAACGAGTTGCCATTTATTCCGG-CGG-GATTATCGGAACTCG 718
|||| ||| | ||| ||| ||||||| || || |||| || | || |||||| |||
Sbjct 716 GTCGAATCAG-TTTCTCTGACGAGTTACCGGTT-TTCCCCTCGAAG-TTGTCGGAAATCG 772
Query 719 GGAGAGATTTCTTGGAGAAA-TG-CTTGAAACGTGATCGGAGTCAGCGGTGGAGTTGTGA 776
| | |||||| | || ||| || || ||| || || | || |||| |||||||||| ||
Sbjct 773 GCCGTGATTTCCTAGA-AAAGTGTCT-GAAGCGAGACCCGAATCAGAGGTGGAGTTGCGA 830
Query 777 TCAGCTTTTGCAGCATCCGTTTCTGTTTCAA-GATCATCATGACTCGT-TCTTGACCGAG 834
|||||||||||||||||| ||||| | ||| | ||| || |||| | || ||| |||
Sbjct 831 TCAGCTTTTGCAGCATCCATTTCTCTCTCAGTG-TCA-CA--ACTCATCTCC-GACTGAG 885
Query 835 TCGTCTCCGCGTTGCGTTCTTGACTGGGTCAACTCGGAGTTCGAC---GAAGAAGAAGA- 890
|| |||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||
Sbjct 886 TCATCTCCGCGTTGCGTACTTGACTGGGTCAACTCGGGGTTTGACTTAGAAGAAGAAGAA 945
Query 891 GAGCAACG-AGTGGAGACCAGAATCC-ATGGTTTCAGC-AATGGCAAGGATAAGTAAATT 947
||| || | || ||||| |||||| | | | | || || ||||| || |||| ||
Sbjct 946 GAGGAA-GTAG-GGAGATCAGAATTCGAAGACG-CGGCGAA-GGCAATAATTTGTAATTT 1001
Query 948 AGCGATAACCGGAGGGGCAAATTGGGAATCTA-ATGGTTGGACTG-AGGTTAGA-GACAC 1004
|||| |||||||| | || |||||| || | |||||||| || | |||||| | |||
Sbjct 1002 GGCGACGACCGGAGGAGTAATTTGGGAGTC-AGATGGTTGGG-TGGAAGTTAGATGCCAC 1059
Query 1005 --TTCCGAAGAGTCAGGGGCAATAAAGGAAG-TTCCTGTTTCAACAAGGGTAGAATTGGG 1061
||| |||||| |||| ||| || |||| ||| | | || |||||||||||| ||
Sbjct 1060 GCTTCGGAAGAGGAAGGGACAACAATGGAATATTCGGGATCCA-CAAGGGTAGAATCGGA 1118
Query 1062 ATTTAACACATCATCGGA 1079
|| |||||||||||||||
Sbjct 1119 ATATAACACATCATCGGA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5