BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344787
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30240.1 | Symbols: ATCHX13, CHX13 | Cation/hydrogen exchang... 3869 0.0
> AT2G30240.1 | Symbols: ATCHX13, CHX13 | Cation/hydrogen exchanger
family protein | chr2:12899907-12902779 REVERSE LENGTH=2496
Length=2496
Score = 3869 bits (2095), Expect = 0.0
Identities = 2365/2498 (95%), Gaps = 7/2498 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTGTCGACGTTTGGCAGAGACGATATCAACTCGTCGCAATTGGGCGAAGTGCAC 60
||||| || |||| |||||||||||| |||| |||||||||||| | |||||||||||||
Sbjct 1 ATGGAGCTTTCGATGTTTGGCAGAGAAGATACCAACTCGTCGCAGTGGGGCGAAGTGCAC 60
Query 61 GGTCCATTCATGTTGGAAGAGCTTGTGTGCCAGACACAAAACATGTTGACCTCAAAAGGC 120
|||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| ||||
Sbjct 61 GGTCCATTCATGCTGGAAGAGATTGTGTGCCAGGCACAAAACATGCTGACCTCAAGAGGC 120
Query 121 ATTTTCATGAAGAGTGACCCTCTCAAATACGCAATGCCTCTTCTATTGCTACAAATGTCA 180
||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ATTTTCATGAAAAGTAACCCTCTCAAATACGCATTGCCTCTTCTATTGCTACAAATGTCA 180
Query 181 GTCATCATCGTAACTTCTAGGCTTATCTTCCGTGTACTTCAACCTTTAAAGCAAGGAATG 240
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 GTCATCATCGTCACCTCTAGGCTTATCTTCCGCGTCCTTCAACCTTTAAAGCAAGGAATG 240
Query 241 ATCTCTGCTCAAGTCTTGACTGGTGTTGTTTTAGGACCGTCTTTCTTAGGACACAATGTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATCTCTGCTCAAGTCTTGACTGGTGTTGTTTTAGGACCGTCTTTCTTAGGACATAATGTG 300
Query 301 AGATACATGAACATGTTTCTTCCCGCTGGAGGCAAGATCATTATACAAACGCTTTCAAAC 360
| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 301 ATTTACATGAACATGTTTCTTCCCGCGGGAGGCAAGATCATAATACAAACGCTTTCAAAC 360
Query 361 GTCGGTTTCGTCATCCATCTCTTCCTCCTCGGACTCAAAATCGATGGGAGTATTATCAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCGGTTTCGTCATCCATCTCTTCCTCCTCGGACTCAAAATCGATGGGAGTATTATCAGA 420
Query 421 AAAGCTGGCTCTAAAGCCATCCTCATTGGTACAGCCTCTTACGCCTTCCCGTTCTCGCTT 480
|||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 421 AAAGCTGGTTCTAAAGCCATTCTTATTGGTACAGCCTCTTACGCCTTCCCGTTCTCTCTT 480
Query 481 GGGAACCTTACGATTTTGTTCATTAGTAAAACTATGGGACTTCCCAGCGACGTGATTAGC 540
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGAACCTCACGATTATGTTCATTAGTAAAACTATGGGACTTCCCAGCGACGTGATTAGT 540
Query 541 TGTACAAGCAGCGCGATCTCCTTGAGCTCGATGACTTCATTTCCGGTTACAACCACGGTA 600
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 541 TGTACAAGCAGCGCAATCTCCTTGAGCTCTATGACTTCATTCCCGGTTACAACCACGGTC 600
Query 601 TTAGCTGAACTTAACATCCTTAACTCTGAGCTAGGTCGGTTAGCCACCCACTGCTCAATG 660
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 601 TTAGCGGAACTTAACATCCTTAACTCCGAGCTAGGTCGTTTAGCCACCCACTGCTCAATG 660
Query 661 GTCTGCGAAATTTGTAGCTGGTTCGTCGCTCTCGCGTTTAATCTCTACACGCGTGAGCGG 720
||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 661 GTCTGCGAAGTTTGTAGCTGGTTTGTCGCTCTCGCTTTTAATCTCTACACACGTGACCGG 720
Query 721 ACGATGACTAGCCTTTACGCGATTTTCATGATCGTAGGTCTTCTTCTGGTGATATATTTC 780
||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||| ||||||
Sbjct 721 ACGATGACTAGTCTTTACGCGCTTTCCATGATCATAGGTCTCCTTCTGGTGATTTATTTC 780
Query 781 GTCTTTAGACCTATAATAGTATGGCTCACCCAGAGGAAAAGCAAATCAATGGATAAGAAA 840
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 781 GTCTTTAGACCTATAATAGTATGGCTCACCCAGAGGAAAACCAAATCCATGGATAAGAAA 840
Query 841 GACGTTGTACCGTTCTTCCCGGTCCTCTTTCTTTTATCTGTAGCTAGCCTTAGCGGAGAG 900
|||||||| |||||||| ||||| ||||| ||||||||| ||||||||||||| ||||||
Sbjct 841 GACGTTGTCCCGTTCTTTCCGGTACTCTTGCTTTTATCTATAGCTAGCCTTAGTGGAGAG 900
Query 901 GCCATGGGGGTCCATGCTGCGTTTGGAGCGTTTTGGTTAGGCGTTTCTCTCCCTGATGGT 960
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 901 GCCATGGGGGTCCATGCTGCGTTTGGAGCGTTTTGGTTAGGTGTTTCGCTCCCTGATGGT 960
Query 961 CCGCCTTTAGGCACGGAACTTGCTGCGAAACTCGAGATGTTTGCTTCGAATTTGTTCCTC 1020
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 CCACCTTTAGGCACGGAACTTGCTGCAAAACTCGAGATGTTTGCTTCGAATTTGTTCCTC 1020
Query 1021 CCCTGTTTCATCGCCATTAGTGGTTTGCAAACAAATTTCTTTGAGATCACAGAGAGCCAT 1080
|| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1021 CCTTGTTTCATTGCCATTAGTGGGTTGCAAACTAATTTCTTTGAGATAACAGAGAGCCAT 1080
Query 1081 GAGCACCATGTGGTAATGATTGAGATCATTCTCTTGATCACTTATGGATGCAAGTTCCTT 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GAGCACCATGTGGTAATGATTGAGATAATTCTCTTGATCACTTATGGATGCAAGTTCCTT 1140
Query 1141 GGAACAGCGGCTGCGTCTGCTTACTGCCAAACGCAGATCGGAGACGCGCTTTGTTTGGCC 1200
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 GGAACAGCAGCTGCGTCTGCTTACTGCCAAACGCAGATTGGAGACGCGCTTTGTTTGGCC 1200
Query 1201 TTCTTGATGTGTTGCCAAGGTATCATTGAAGTCTACACTACTATCGTGTGGAAAGACGCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTCTTGATGTGTTGCCAAGGTATCATTGAAGTCTACACTACTATCGTGTGGAAAGACGCT 1260
Query 1261 CAGGTTGTTGACACAGAATGCTTTAATCTGGTGATCATAACGATTTTGTTGGTAACTGGG 1320
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1261 CAGGTTGTTGATACAGAATGCTTTAATCTGGTGATCATCACGATTTTGTTCGTAACTGGT 1320
Query 1321 ATTTCGCGGTTTCTCGTCGTGTACCTCTACGACCCTTCAAAACGTTATAAAAGCAAAAGC 1380
||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 ATTTCCCGGTTCCTCGTGGTGTACCTCTACGACCCTTCAAAACGTTACAAAAGCAAAAGC 1380
Query 1381 AAACGAACAATCCTCAACACGAGACAACACAATCTTCAGCTACGTCTTCTCCTTGGCCTC 1440
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1381 AAACGAACAATCCTCAACACGAGACAACATAATCTTCAGCTACGTCTTCTCCTTGGTCTC 1440
Query 1441 TACAATGTTGAAAACGTTCCTTCTATGGTGAATCTTCTAGAAGCTACTTACCCGACACGG 1500
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1441 TATAATGTTGAAAACGTTCCTTCCATGGTTAATCTTCTAGAAGCTACTTACCCGACACGG 1500
Query 1501 TTTAACCCGATCTCATTCTTTACTTTGCATCTCGTCGAGCTTAAAGGCCGAGCTCATGCA 1560
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1501 TTTAACCCGATCTCATTCTTTACGTTGCACCTCGTCGAGCTTAAAGGCCGAGCTCATGCA 1560
Query 1561 GTCCTTACACCGCACCATCAGATGAACAAACTTGACCCTAATACGGCCCAGTCCACTCAC 1620
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1561 CTCCTTACACCACACCATCAGATGAACAAACTTGACCCTAACACGGCCCAGTCCACACAT 1620
Query 1621 ATCGTCAACGCCTTCCAGCGTTTCGAGCAAAAGTACCAGGGAGCTCTCATGGCGCAACAC 1680
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1621 ATTGTCAACGCCTTTCAGCGTTTTGAGCAAAAGTACCAGGGAGCTCTCATGGCGCAACAC 1680
Query 1681 TTTACCGCAGCCGCGCCTTACTCGAGTATAAACAACGACGTATGTACGCTTGCGCTCGAC 1740
||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||
Sbjct 1681 TTTACCGCAGCCGCGCCTTACTCGAGTATAAACAACGACATATGCACGCTGGCCCTCGAC 1740
Query 1741 AAGAAGGCGACGTTAATTGTGATTCCGTTCCACAAGCAGTACGCGATTGACGGAACGGTC 1800
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1741 AAGAAAGCGACGTTAATCGTGATTCCGTTCCACAAGCAGTACGCGATTGACGGGACGGTC 1800
Query 1801 GGACAAGTCAACGGGCCCATCCGGAACATAAACCTTAACGTGTTGGAAGCGGCACCTTGT 1860
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1801 GGACAAGTCAACGGGCCCATCCGGACCATAAACCTTAACGTGTTGGACGCGGCACCTTGT 1860
Query 1861 TCGGTCGCAATATTCATAGACCGAGGAGAGACCGAGGGACGTCGCTCCGTGTTGATGACC 1920
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1861 TCGGTGGCAATATTCATAGACCGAGGAGAGACCGAGGGACGTCGGTCCGTGTTGATGACC 1920
Query 1921 AATACGTGGCATAACGTGGCGATGCTCTTCATCGGAGGCAAGGATGACGCGGAAGCGCTA 1980
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1921 AATACGTGGCAGAACGTTGCGATGCTCTTCATCGGTGGCAAGGATGATGCGGAAGCGCTC 1980
Query 1981 GCGTTATGCATGAGGATGGCTGAAAAACCGGACCTTAACGTTACGATGATACATTTCCGT 2040
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1981 GCGTTATGCATGAGGATGGCTGAAAAACCAGACCTTAACGTTACGATGATACATTTCCGT 2040
Query 2041 CACAAGAGCGCTCTTCAAGACGAGGATTACAGTGACATGTCTGAGTACAATCTAAT-ATG 2099
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || | |
Sbjct 2041 CACAAGAGCGCTCTTCAAGACGAAGATTACAGCGACATGTCTGAGTACAATCTCATCA-G 2099
Query 2100 CGATTTCAAGAGCCATGCAGCGAACAAAGGGAAAGTTCATTACGTGGAGGAGATAGTGAG 2159
|||||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 2100 TGATTTCAAGAGCTATGCAGCGAACAAAGGGAAAATTCACTACGTAGAGGAGATAGTGAG 2159
Query 2160 AGATGGCGTGGAGACTACACAAGTGATTAGCTCACTTGGAGATTCCTATGACATGGTGTT 2219
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 2160 AGATGGCGTGGAGACTACGCAAGTGATTAGCTCACTTGGAGATGCCTATGACATGGTGTT 2219
Query 2220 AGTAGGG-CGAGACCATGACCTAGAGTCTTCGGTCTTGTACGGACTCACGGACTGGAGTG 2278
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 AGT-GGGTCGAGACCATGACCTAGAGTCTTCGGTCTTGTACGGACTCACGGACTGGAGTG 2278
Query 2279 AGTGCCCTGAGTTAGGTGTGATCGGAGATATGTTGACGTCGCCAGATTTTCATTTCTCCG 2338
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2279 AGTGCCCTGAGTTAGGTGTGATCGGAGATATGTTGACGTCGCCGGATTTTCATTTCTCCG 2338
Query 2339 TACTTGTCGTTCATCAGCAGCAAGGAGACT-C--ACTGGCCATGGACGATAGTTATAAAT 2395
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2339 TACTTGTCGTTCATCAGCAGCAAGGAGACGACTTACTGGCCATGGACGATAGTTATAAAT 2398
Query 2396 TGCCTAACGTCGAGCATCAGAAGATTGGAGATACTGGAATGCAACCACGTTTCTCCGCTG 2455
|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||
Sbjct 2399 TGCCTAACGTCGAGCATCAGAAGATTGGTGATACTGGAATACAACAACGTTTCTCTGCTG 2458
Query 2456 AAGAAGGTTTCACTACCATTGATCTCGGTAAACACTAG 2493
||||||||||||||||||||||||||||||||| ||||
Sbjct 2459 AAGAAGGTTTCACTACCATTGATCTCGGTAAACGCTAG 2496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123711681438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5