BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg344787

Length=2493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30240.1 | Symbols: ATCHX13, CHX13 | Cation/hydrogen exchang...  3869    0.0  


> AT2G30240.1 | Symbols: ATCHX13, CHX13 | Cation/hydrogen exchanger 
family protein | chr2:12899907-12902779 REVERSE LENGTH=2496
Length=2496

 Score = 3869 bits (2095),  Expect = 0.0
 Identities = 2365/2498 (95%), Gaps = 7/2498 (0%)
 Strand=Plus/Plus

Query  1     ATGGATCTGTCGACGTTTGGCAGAGACGATATCAACTCGTCGCAATTGGGCGAAGTGCAC  60
             ||||| || |||| |||||||||||| |||| |||||||||||| | |||||||||||||
Sbjct  1     ATGGAGCTTTCGATGTTTGGCAGAGAAGATACCAACTCGTCGCAGTGGGGCGAAGTGCAC  60

Query  61    GGTCCATTCATGTTGGAAGAGCTTGTGTGCCAGACACAAAACATGTTGACCTCAAAAGGC  120
             |||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| ||||
Sbjct  61    GGTCCATTCATGCTGGAAGAGATTGTGTGCCAGGCACAAAACATGCTGACCTCAAGAGGC  120

Query  121   ATTTTCATGAAGAGTGACCCTCTCAAATACGCAATGCCTCTTCTATTGCTACAAATGTCA  180
             ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  121   ATTTTCATGAAAAGTAACCCTCTCAAATACGCATTGCCTCTTCTATTGCTACAAATGTCA  180

Query  181   GTCATCATCGTAACTTCTAGGCTTATCTTCCGTGTACTTCAACCTTTAAAGCAAGGAATG  240
             ||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  181   GTCATCATCGTCACCTCTAGGCTTATCTTCCGCGTCCTTCAACCTTTAAAGCAAGGAATG  240

Query  241   ATCTCTGCTCAAGTCTTGACTGGTGTTGTTTTAGGACCGTCTTTCTTAGGACACAATGTG  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  241   ATCTCTGCTCAAGTCTTGACTGGTGTTGTTTTAGGACCGTCTTTCTTAGGACATAATGTG  300

Query  301   AGATACATGAACATGTTTCTTCCCGCTGGAGGCAAGATCATTATACAAACGCTTTCAAAC  360
             |  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  301   ATTTACATGAACATGTTTCTTCCCGCGGGAGGCAAGATCATAATACAAACGCTTTCAAAC  360

Query  361   GTCGGTTTCGTCATCCATCTCTTCCTCCTCGGACTCAAAATCGATGGGAGTATTATCAGA  420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361   GTCGGTTTCGTCATCCATCTCTTCCTCCTCGGACTCAAAATCGATGGGAGTATTATCAGA  420

Query  421   AAAGCTGGCTCTAAAGCCATCCTCATTGGTACAGCCTCTTACGCCTTCCCGTTCTCGCTT  480
             |||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct  421   AAAGCTGGTTCTAAAGCCATTCTTATTGGTACAGCCTCTTACGCCTTCCCGTTCTCTCTT  480

Query  481   GGGAACCTTACGATTTTGTTCATTAGTAAAACTATGGGACTTCCCAGCGACGTGATTAGC  540
             |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  481   GGGAACCTCACGATTATGTTCATTAGTAAAACTATGGGACTTCCCAGCGACGTGATTAGT  540

Query  541   TGTACAAGCAGCGCGATCTCCTTGAGCTCGATGACTTCATTTCCGGTTACAACCACGGTA  600
             |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct  541   TGTACAAGCAGCGCAATCTCCTTGAGCTCTATGACTTCATTCCCGGTTACAACCACGGTC  600

Query  601   TTAGCTGAACTTAACATCCTTAACTCTGAGCTAGGTCGGTTAGCCACCCACTGCTCAATG  660
             ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  601   TTAGCGGAACTTAACATCCTTAACTCCGAGCTAGGTCGTTTAGCCACCCACTGCTCAATG  660

Query  661   GTCTGCGAAATTTGTAGCTGGTTCGTCGCTCTCGCGTTTAATCTCTACACGCGTGAGCGG  720
             ||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct  661   GTCTGCGAAGTTTGTAGCTGGTTTGTCGCTCTCGCTTTTAATCTCTACACACGTGACCGG  720

Query  721   ACGATGACTAGCCTTTACGCGATTTTCATGATCGTAGGTCTTCTTCTGGTGATATATTTC  780
             ||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||| ||||||
Sbjct  721   ACGATGACTAGTCTTTACGCGCTTTCCATGATCATAGGTCTCCTTCTGGTGATTTATTTC  780

Query  781   GTCTTTAGACCTATAATAGTATGGCTCACCCAGAGGAAAAGCAAATCAATGGATAAGAAA  840
             |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct  781   GTCTTTAGACCTATAATAGTATGGCTCACCCAGAGGAAAACCAAATCCATGGATAAGAAA  840

Query  841   GACGTTGTACCGTTCTTCCCGGTCCTCTTTCTTTTATCTGTAGCTAGCCTTAGCGGAGAG  900
             |||||||| |||||||| ||||| ||||| ||||||||| ||||||||||||| ||||||
Sbjct  841   GACGTTGTCCCGTTCTTTCCGGTACTCTTGCTTTTATCTATAGCTAGCCTTAGTGGAGAG  900

Query  901   GCCATGGGGGTCCATGCTGCGTTTGGAGCGTTTTGGTTAGGCGTTTCTCTCCCTGATGGT  960
             ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  901   GCCATGGGGGTCCATGCTGCGTTTGGAGCGTTTTGGTTAGGTGTTTCGCTCCCTGATGGT  960

Query  961   CCGCCTTTAGGCACGGAACTTGCTGCGAAACTCGAGATGTTTGCTTCGAATTTGTTCCTC  1020
             || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  961   CCACCTTTAGGCACGGAACTTGCTGCAAAACTCGAGATGTTTGCTTCGAATTTGTTCCTC  1020

Query  1021  CCCTGTTTCATCGCCATTAGTGGTTTGCAAACAAATTTCTTTGAGATCACAGAGAGCCAT  1080
             || |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct  1021  CCTTGTTTCATTGCCATTAGTGGGTTGCAAACTAATTTCTTTGAGATAACAGAGAGCCAT  1080

Query  1081  GAGCACCATGTGGTAATGATTGAGATCATTCTCTTGATCACTTATGGATGCAAGTTCCTT  1140
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1081  GAGCACCATGTGGTAATGATTGAGATAATTCTCTTGATCACTTATGGATGCAAGTTCCTT  1140

Query  1141  GGAACAGCGGCTGCGTCTGCTTACTGCCAAACGCAGATCGGAGACGCGCTTTGTTTGGCC  1200
             |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1141  GGAACAGCAGCTGCGTCTGCTTACTGCCAAACGCAGATTGGAGACGCGCTTTGTTTGGCC  1200

Query  1201  TTCTTGATGTGTTGCCAAGGTATCATTGAAGTCTACACTACTATCGTGTGGAAAGACGCT  1260
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1201  TTCTTGATGTGTTGCCAAGGTATCATTGAAGTCTACACTACTATCGTGTGGAAAGACGCT  1260

Query  1261  CAGGTTGTTGACACAGAATGCTTTAATCTGGTGATCATAACGATTTTGTTGGTAACTGGG  1320
             ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| 
Sbjct  1261  CAGGTTGTTGATACAGAATGCTTTAATCTGGTGATCATCACGATTTTGTTCGTAACTGGT  1320

Query  1321  ATTTCGCGGTTTCTCGTCGTGTACCTCTACGACCCTTCAAAACGTTATAAAAGCAAAAGC  1380
             ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1321  ATTTCCCGGTTCCTCGTGGTGTACCTCTACGACCCTTCAAAACGTTACAAAAGCAAAAGC  1380

Query  1381  AAACGAACAATCCTCAACACGAGACAACACAATCTTCAGCTACGTCTTCTCCTTGGCCTC  1440
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  1381  AAACGAACAATCCTCAACACGAGACAACATAATCTTCAGCTACGTCTTCTCCTTGGTCTC  1440

Query  1441  TACAATGTTGAAAACGTTCCTTCTATGGTGAATCTTCTAGAAGCTACTTACCCGACACGG  1500
             || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  1441  TATAATGTTGAAAACGTTCCTTCCATGGTTAATCTTCTAGAAGCTACTTACCCGACACGG  1500

Query  1501  TTTAACCCGATCTCATTCTTTACTTTGCATCTCGTCGAGCTTAAAGGCCGAGCTCATGCA  1560
             ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  1501  TTTAACCCGATCTCATTCTTTACGTTGCACCTCGTCGAGCTTAAAGGCCGAGCTCATGCA  1560

Query  1561  GTCCTTACACCGCACCATCAGATGAACAAACTTGACCCTAATACGGCCCAGTCCACTCAC  1620
              |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || 
Sbjct  1561  CTCCTTACACCACACCATCAGATGAACAAACTTGACCCTAACACGGCCCAGTCCACACAT  1620

Query  1621  ATCGTCAACGCCTTCCAGCGTTTCGAGCAAAAGTACCAGGGAGCTCTCATGGCGCAACAC  1680
             || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1621  ATTGTCAACGCCTTTCAGCGTTTTGAGCAAAAGTACCAGGGAGCTCTCATGGCGCAACAC  1680

Query  1681  TTTACCGCAGCCGCGCCTTACTCGAGTATAAACAACGACGTATGTACGCTTGCGCTCGAC  1740
             ||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||
Sbjct  1681  TTTACCGCAGCCGCGCCTTACTCGAGTATAAACAACGACATATGCACGCTGGCCCTCGAC  1740

Query  1741  AAGAAGGCGACGTTAATTGTGATTCCGTTCCACAAGCAGTACGCGATTGACGGAACGGTC  1800
             ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1741  AAGAAAGCGACGTTAATCGTGATTCCGTTCCACAAGCAGTACGCGATTGACGGGACGGTC  1800

Query  1801  GGACAAGTCAACGGGCCCATCCGGAACATAAACCTTAACGTGTTGGAAGCGGCACCTTGT  1860
             ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  1801  GGACAAGTCAACGGGCCCATCCGGACCATAAACCTTAACGTGTTGGACGCGGCACCTTGT  1860

Query  1861  TCGGTCGCAATATTCATAGACCGAGGAGAGACCGAGGGACGTCGCTCCGTGTTGATGACC  1920
             ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1861  TCGGTGGCAATATTCATAGACCGAGGAGAGACCGAGGGACGTCGGTCCGTGTTGATGACC  1920

Query  1921  AATACGTGGCATAACGTGGCGATGCTCTTCATCGGAGGCAAGGATGACGCGGAAGCGCTA  1980
             ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| 
Sbjct  1921  AATACGTGGCAGAACGTTGCGATGCTCTTCATCGGTGGCAAGGATGATGCGGAAGCGCTC  1980

Query  1981  GCGTTATGCATGAGGATGGCTGAAAAACCGGACCTTAACGTTACGATGATACATTTCCGT  2040
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1981  GCGTTATGCATGAGGATGGCTGAAAAACCAGACCTTAACGTTACGATGATACATTTCCGT  2040

Query  2041  CACAAGAGCGCTCTTCAAGACGAGGATTACAGTGACATGTCTGAGTACAATCTAAT-ATG  2099
             ||||||||||||||||||||||| |||||||| |||||||||||||||||||| || | |
Sbjct  2041  CACAAGAGCGCTCTTCAAGACGAAGATTACAGCGACATGTCTGAGTACAATCTCATCA-G  2099

Query  2100  CGATTTCAAGAGCCATGCAGCGAACAAAGGGAAAGTTCATTACGTGGAGGAGATAGTGAG  2159
              |||||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct  2100  TGATTTCAAGAGCTATGCAGCGAACAAAGGGAAAATTCACTACGTAGAGGAGATAGTGAG  2159

Query  2160  AGATGGCGTGGAGACTACACAAGTGATTAGCTCACTTGGAGATTCCTATGACATGGTGTT  2219
             |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct  2160  AGATGGCGTGGAGACTACGCAAGTGATTAGCTCACTTGGAGATGCCTATGACATGGTGTT  2219

Query  2220  AGTAGGG-CGAGACCATGACCTAGAGTCTTCGGTCTTGTACGGACTCACGGACTGGAGTG  2278
             ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2220  AGT-GGGTCGAGACCATGACCTAGAGTCTTCGGTCTTGTACGGACTCACGGACTGGAGTG  2278

Query  2279  AGTGCCCTGAGTTAGGTGTGATCGGAGATATGTTGACGTCGCCAGATTTTCATTTCTCCG  2338
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  2279  AGTGCCCTGAGTTAGGTGTGATCGGAGATATGTTGACGTCGCCGGATTTTCATTTCTCCG  2338

Query  2339  TACTTGTCGTTCATCAGCAGCAAGGAGACT-C--ACTGGCCATGGACGATAGTTATAAAT  2395
             |||||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||
Sbjct  2339  TACTTGTCGTTCATCAGCAGCAAGGAGACGACTTACTGGCCATGGACGATAGTTATAAAT  2398

Query  2396  TGCCTAACGTCGAGCATCAGAAGATTGGAGATACTGGAATGCAACCACGTTTCTCCGCTG  2455
             |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||
Sbjct  2399  TGCCTAACGTCGAGCATCAGAAGATTGGTGATACTGGAATACAACAACGTTTCTCTGCTG  2458

Query  2456  AAGAAGGTTTCACTACCATTGATCTCGGTAAACACTAG  2493
             ||||||||||||||||||||||||||||||||| ||||
Sbjct  2459  AAGAAGGTTTCACTACCATTGATCTCGGTAAACGCTAG  2496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 123711681438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5