BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344798
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30350.2 | Symbols: | Excinuclease ABC, C subunit, N-termin... 944 0.0
> AT2G30350.2 | Symbols: | Excinuclease ABC, C subunit, N-terminal
| chr2:12934150-12935773 REVERSE LENGTH=1225
Length=1225
Score = 944 bits (511), Expect = 0.0
Identities = 628/682 (92%), Gaps = 17/682 (2%)
Strand=Plus/Plus
Query 1 ATGAGAGAGAAAAGGGGAAATCGGAAAACCCTAGATCCCGTCGGTGAGGATGGAGTCACC 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 32 ATGAGAGAGAAAAGGGGAAATCGGAAAGCCCTAGATCCCGTCGGTGAGGATGGAGTCACC 91
Query 61 GGAAAAGAGGGAAAAGGCTTCTTCGCTTGTTATCTCTTGACCTCTCTTAGCCCTCGTCAT 120
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 92 GGAAAAGATGGAAAAGGCTTCTTCGCCTGTTATCTCTTGACCTCTCTTAGCCCTCGTCAT 151
Query 121 AAGGGTCAAACCTATATCGGGTTCACGGTAAACCCGAGGCGGAGAATAAGGCAGCACAAT 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 152 AAGGGTCAAACCTATATCGGGTTCACTGTAAACCCGAGGCGGAGAATAAGGCAGCACAAT 211
Query 181 GGAGAGATCACTAGTGGTGCTTGGAGAACAAAGAACAAACGTCCATGGGAAATGGTTCTC 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 212 GGAGAGATCACTAGTGGTGCTTGGAGAACAAAGAAGAAACGTCCATGGGAAATGGTTCTC 271
Query 241 TGTATCTATGGTTTCCCCACCAATGTCTCTGCCCTTCAGAAACCCCCGTTGCAGTTTGAA 300
||||||||||||||||||||||||| ||| | | | ||| || |||||||||
Sbjct 272 TGTATCTATGGTTTCCCCACCAATG--TCT---C-T--G-----CCC-TT-CAGTTTGAA 316
Query 301 TGGGCTTGGCAGCATCCGAGGGAATCGGTGGCAGTGAGAGAAGCTGCTGCTGCTTTCAAA 360
|||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||
Sbjct 317 TGGGCTTGGCAGCATCCGAGAGAATCGGTTGCAGTTAGAGAAGCTGCTGCGGCTTTCAAA 376
Query 361 TCCTTTTCTGGGATTGC-AGGCAAGATCAAGCTTGTATACACAATGTTAAATCTTCCAGC 419
||||| |||||| |||| | | ||||||||||||||||| ||||||||||||||||||||
Sbjct 377 TCCTTCTCTGGGGTTGCTA-GTAAGATCAAGCTTGTATATACAATGTTAAATCTTCCAGC 435
Query 420 TTGGAATAGTTTAAACCTCACAGTCAATTATTTTTCGTCAAAGTATGCACACCACGGTGG 479
|||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 436 TTGGAATAGTTTGAACCTCACGGTTAATTATTTCTCGTCAAAGTATGCACACCACGGTGG 495
Query 480 TCAATCTCCAAGTTTACCTCTACATATGAAAGTCCAAGTTTGTGCTATGGATGATCTTCA 539
| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 496 TAAATCTCCAAGTTTACCTTTACATATGAAAGTTCAAGTTTGTGCTATGGAGGATCTTCA 555
Query 540 GTATTTCACAAAGCTAGACAATGGTTCTCAACCCGAAGATGAAGAGAGTCCCGAGGGTAA 599
||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 556 GTATTTCACAAAGGTAGATGACAGTTCTCAACCCGAAGATGAAGAGAGTCCCGAGGTTAA 615
Query 600 TGAAGAGAATGAAGAGGAGGAGGATGAGGATAGTAGCAACCAAAGCCAGCCTGGGAATTC 659
||||||| |||| || || || ||||| ||||||||||||| ||||||||||||||||||
Sbjct 616 TGAAGAGGATGATGATGATGATGATGATGATAGTAGCAACCTAAGCCAGCCTGGGAATTC 675
Query 660 AAATACGTGCTCAACGGATGAC 681
|||||| ||||| ||||||||
Sbjct 676 AAATACAAGCTCATCGGATGAC 697
Score = 673 bits (364), Expect = 0.0
Identities = 415/439 (95%), Gaps = 5/439 (1%)
Strand=Plus/Plus
Query 710 ACCGGCATTTTGAAAATGCGAAAGAACCCGAAACTGTATTTGATGAAGAAGACAGATTAG 769
|||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 696 ACCGGCATTTTGAAAAAGCGAAAGAACCTGTAACTGTATTTGATGAAGAAGACAGATTAG 755
Query 770 CAAATTTCACTGGTTTTGGTTTATT--A-GAAGAAGAGACTGTTGAAGATGAAGTATCAC 826
||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 756 CAAATTTCAGTGGTTTTGGCTTATTAGATGAAGAAGAGACTGTTGAAGATGAAGTATCAC 815
Query 827 ATATCACTGTAGGATCCATTGA-AGCTACGGAGAAAGAACCCGAGACTGTATTCAACGAC 885
|||||||||| ||||||||| | |||||| |||||||||||||||||||||||||| |||
Sbjct 816 ATATCACTGTTGGATCCATT-AGAGCTACTGAGAAAGAACCCGAGACTGTATTCAATGAC 874
Query 886 AGATTAGCAAGTTTCACTGGTTTTGGCTTGGTAGAGATTGTTGAAGATGAAGTATCACAT 945
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 875 AGATTAGCAAGTTTCACTTGTTTTGGCTTAGTAGAGATTGTTGAAGATGAAGTATCACAT 934
Query 946 GGAACGGTAGGATCCACTGAAGCTATGGAGAAAGATTGTAGGAGAAGAATGAACCTTATC 1005
||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||
Sbjct 935 GGAACTATAGGATCCACTGAAGCTATGGAGAAAGAGTGTAGGAAAAGAAGGAACCATATC 994
Query 1006 ACCTCAACGACGACTGAGGTTGATGTTGAGGTGATAGATCTGATGACTCCATCACCAAGC 1065
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 995 ACCTCAACGACGACTGAGGTTGATGTAGAGGTGATAGATCTGATGACTCCATCACCAAGC 1054
Query 1066 TGCAGAGATGGGTCATCTATGAAGAGACGAAGAGTTTCTGAGTTTATAGATTTGACTATG 1125
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TGCAGAGCTGGATCATCTATGAAGAGACGAAGAGTTTCTGAGTTTATAGATTTGACTATG 1114
Query 1126 TCTCCTAATTTCATAGAGT 1144
|||||||||||||||||||
Sbjct 1115 TCTCCTAATTTCATAGAGT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5