BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344803
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30395.1 | Symbols: ATOFP17, OFP17 | ovate family protein 17... 909 0.0
> AT2G30395.1 | Symbols: ATOFP17, OFP17 | ovate family protein
17 | chr2:12954174-12955089 REVERSE LENGTH=829
Length=829
Score = 909 bits (492), Expect = 0.0
Identities = 558/590 (95%), Gaps = 4/590 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGTGAAAGCAACTTTGATTAACTTCAAATCAAAGCTTTCCAAATCATGCAACAGA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 7 ATGAGAGTGAAAGCAACTTTGATTAACTTCAAATCAAAGCTTTCGAAATCATGCAACAGA 66
Query 61 TTTGTCTCTCTCTTCCGCTTCCGAGTTAAAAGACCTGTCTTTATTAGACCTCTTCGTGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TTTGTCTCTCTCTTCCGCTTCCGAGTTAAAAGACCTGTCTTTATTAGACCTCTTCGTGCC 126
Query 121 CGTCATGGCAATGTCAAACCTAGACATCAACATCATCATCCCAAGAAGCCAATCTGTTCC 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 127 CGTCATGGCAATGTCAAACCTAGACATCAACATCATCATTCCAAGAAGCCAATCTGTTCT 186
Query 181 TGTCTTTGTTTTCTCAGCACAAGCAAGAACCACAAGATGAGCAAAACCAAACCA-AGATC 239
||||| ||||| |||| ||||||||||||| ||||||||||| |||||| | |||
Sbjct 187 TGTCTCTGTTTCCTCAATTCAAGCAAGAACCATAAGATGAGCAACGCCAAAC-ATAGAAG 245
Query 240 TTCCTCTTTTAGTGTGAACGATGATGATTATTCCAAGTTTATGCACTCACCTCTCACGCC 299
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 246 TTCCTCTTTTAGTGTGAACGATGATGATTACTCCAAGTTTATGCAATCACCTCTTACGCC 305
Query 300 AGCAACAGCCAAGAAGCTATTCACTTCACCCATCACGACGCCTTACTCTACACGGACCAG 359
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 306 AGCAACAGCCAAGAAGCTCTTCACTTCACCCATCACGACACCTTACTCTTCACGGACCAG 365
Query 360 AAAATCGCTGAACTCAAGAGA-AGCATTCGAAGACAATGCGGTGGAAGATGCTTGTAGAA 418
|||||||||||| ||||||| | |||| ||||||||||| |||||||||||||||||||
Sbjct 366 GAAATCGCTGAACGCAAGAGATA-CATTTGAAGACAATGCTGTGGAAGATGCTTGTAGAA 424
Query 419 GCTTTGAAAACTATCTGATTCATCTGATTGTTGAAGAAGGGAAAATAGATGACTTAATGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GCTTTGAAAACTATCTGATTCATCTGATTGTTGAAGAAGGGAAAATAGATGACTTAATGG 484
Query 479 ACATAGAGGAGCTTCTCTTCTGTTGGAAGAATCTAAAGAGTCCTGTCTTCATTGAACTTG 538
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 485 ACATAGAGGAACTTCTCTTCTGTTGGAAGAATCTTAAGAGTCCTGTCTTCATTGAACTTG 544
Query 539 TCTCAAGATTCTATGGAGAACTCTGCAGAGACCTGTTTTCAGGTGAATGA 588
|||||||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct 545 TCTCAAGATTTTATGGAGAACTCTGTAGAGACTTGTTTTCAGGTGAATGA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5