BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344831
Length=2286
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30690.1 | Symbols: | Protein of unknown function, DUF593 |... 3544 0.0
> AT2G30690.1 | Symbols: | Protein of unknown function, DUF593
| chr2:13076229-13078595 FORWARD LENGTH=2283
Length=2283
Score = 3544 bits (1919), Expect = 0.0
Identities = 2167/2288 (95%), Gaps = 11/2288 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCAAATGTTATATTTGATCAAAATGTCATCAACGGGTTCGCGCCGGTGCTAACG 60
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCAAATCTTATATTTGATCAAAAGGTCATCAACGGGTTCGCGCCGGTGCTAACT 60
Query 61 TACGCAGCCTGCGAATGGTTCCTCATATTTCTCATGTTCATCGATGCTCTTCTCTCGTAT 120
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 61 TACGCAGCCTGCGAATGGTTCCTTATATTACTCATGTTCATCGATGCTCTTCTCTCCTAT 120
Query 121 CTTCTCGTCTGGTTTGCACGTTACTGCAGATTGCAGATGCCATGTTTCCTCTGTTCCAAG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCTCGTCTGGTTTGCGCGTTACTGCAGATTGCAGATGCCATGTTTCCTCTGTTCCAAG 180
Query 181 CTTCTTCATCCTCTACATTGGAGATTCTTGCTCTGCAGAAACCACAGATCAGAGGTTTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCTTCATCCTCTACATTGGAGATTCTTGCTCTGCAGAAACCACAGATCAGAGGTTTCA 240
Query 241 TCTTTCATGTCATGTCAGAATCACGGCAACAACCTTGCTGATTGTCGAGGCATGTGTGAT 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TCTTACATGTCATGTCAGAATCACGGCAACAACCTTGCTGATTGTCGAGGCATGTGCGAT 300
Query 301 GATTGTCTCTTGTCGTTTACCAAAATGACCGGTCCGAATCCAGACATGAATAGATTGCTT 360
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 301 GACTGTCTCTTGTCGTTTACCAAAATGACCGGTCCGAATCCAGATATGAACAGATTGCTT 360
Query 361 CTTGGTAAATTAGGGTATGATCTGCTCTCTAGAAGCCATTTTGCTCACCCTAGATCTTGT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CTAGGTAAATTAGGGTATGATCTGCTCTCTAGAAGCCATTTTGCTCACCCTAGGTCTTGT 420
Query 421 TCTTGTTGCAATAAACCGTGGAGGACGAGGCACCATACACAGAGACTGATTCGGTTAGGC 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTTGTTGCAATAAACCGTGGAGAACGAGGCACCATACACAGAGACTGATTCGGTTAGGC 480
Query 481 TCTCG-GGGAAGAAACTCCGCCGGTAAACCCAACATTCCTGCTCCACGGCATCTTAGCCG 539
||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 481 TCTCGAGGG-AGAAACTCCTCAAGTAAACCCAACATTCCTGCTCCACGGCATCTTACCCG 539
Query 540 TCGAGGAAGCGGTGGAAGTTTGAAGACGATGAGAGATCATATGGTAACAAGTGGTTCTGA 599
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 540 ACGAGGAAGCGGTGGAAGTTTGAAGAAGATGAGAGATCATATAGCAACAAGTGGTTCTGA 599
Query 600 GTATGTTGAAGTTGGAAGCCGCAGTGATGGTATGGCTCATGTGGGTTACACAGAGCTGAA 659
||||||||| |||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 600 GTATGTTGATGTTGGAAGCCGC---GACGGTATGGCACATGTGGGCTACACAGAGCTGAA 656
Query 660 GATTCACTCGGATTCTGAGTCTGAGTTCCTGTTTTCAGATGATGATGCATTCCTCCACAT 719
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 657 GATACACTCGGATTCTGAGTCTGAGTTCTTGTTTTCAGATGATGATGCATTCCTCCATAT 716
Query 720 AACTGACTTCAATGTTGAGCCAAATGAGAAACGTGCGCACAAGTCTCGAAGGCGGAAATC 779
|||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 717 AACTGACTTCAATGTTGAGCCATCTGAGAAACGCACGCACAAATCTCGAAGGCGGAAATC 776
Query 780 ATTTGA-AATCAAGAAGATGCCGAATCATAAACTGCCTGACTTGCAAGACAACCAGGGTA 838
||||| | |||||||||| |||||||||||| ||||| |||||||||||||||| ||
Sbjct 777 GTTTGACGA-CAAGAAGATGTCGAATCATAAACAGCCTGTCTTGCAAGACAACCAGTATA 835
Query 839 AGAACATTCATGTAGAAGATAAAGAAACCGTCGCATCTTCAATGCATGAGCATAATCTTG 898
|||| ||||||||||||||||| ||||| |||| ||||||||||| || | |||||||||
Sbjct 836 AGAAAATTCATGTAGAAGATAATGAAACTGTCGAATCTTCAATGCTTGGGTATAATCTTG 895
Query 899 AAAACAGGACTCGGCAGAAACAACCTGTTAAGGCGAAGGAGCATCATGATGTACTCTCTG 958
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 896 AAAACAGGACTCGGCAGAAACAACCTGTTAAGGCAAAGGAGCATGATGATGTACTCTCTG 955
Query 959 AGCTTATAACTATGAGTGAAGCTCGTCCGTTTTTACTGGGGTCGCCTCGAAAGTATGAAG 1018
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 956 AGCTTATAACTATGAGTGAAGCTCGTCCGTTTTTACTGGGTTCACCTCGAAAGTATGCTG 1015
Query 1019 CAAGAGCAGTGGCACAAAATGAAAATGAAGCTGAGGTAAGTGGCAACTCATCTCCTTCTG 1078
|| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1016 CAGGAGTAGTCACACAAAATGAAAATGAAGCTGAGGTAAGTGGCAGCTCATCTCCTTCTG 1075
Query 1079 GCGGAGAATTTTTGAGTCCTTCTGGAGAAAACGGTGTCTCTCGGGAAATCCGAAATCAAG 1138
|||||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |||||
Sbjct 1076 GCGGAGAATTTTTGAGCCCTTCTGCAGAAAACGGTGCCTCTAGGGAAATCCGAATTCAAG 1135
Query 1139 AGCATGATGATTCCTCAGATTTTTCTCAAAACATCCCCAGTTCAGCTATGGAGATGGAAG 1198
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1136 AGCATGATGATTCCTCAGATTTTTCTCAAAACATCACCAGTTCAGCTATGGAGATAGAAG 1195
Query 1199 AATTTGAGCCAGCTATGGAGCAAAAAGAGTCTGATCACATGGATGTGTCTGGTTCTGTTG 1258
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AATTTGAGGCAGCTATTGAGCAAAAAGAGTCTGATCACATGGATGTGTCTGGTTCTGTTG 1255
Query 1259 CAAATGAACCGTCTAGTGATGAAGAGAATGGAGTTGAAGGAGACTCCAAGCCTTTGATAT 1318
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1256 CAAATGAACCGTCTAGTGATGAGGAGAATGAAGTTGAAGGAGACTCCAAGCCTTTGATAT 1315
Query 1319 CGAATAATATGTCAGATTCTCTGGAACAGGAACAGTCAGGTGAGGAAGAAAGTGAGGTTA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CGAATAATATGTCAGATTCTCTGGAACAGGAACAGTCAGGTGAGGAAGAAAGTGAGGTTA 1375
Query 1379 ATGAAAACAATGTTGCAGAAGAATACTTCAGTAATGAAGAAGAAGAAGAGGTCAATGGAC 1438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1376 ATGAAAACAATGTTGCAGAAGAATACTTCAGTAATGAAGAAGAAGATGAGGTCAATGGAC 1435
Query 1439 ATACCGAGCCCTTGACATCAAATAA-TGAGTCTGGTTCATTTGCTGAAGAACGATCCAGT 1497
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||
Sbjct 1436 ATACCGAGCCCTTGACATCAAA-AAGTGAGTCTGGTTCATTTGCTGAAGAACAATCTAGT 1494
Query 1498 GAGGAAGAAGATGGAAGTAATATCTATTCGGCTGCAAAAGACCATTCCAGTAACGGAGAG 1557
||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||
Sbjct 1495 GAGGACGAAGATGGAAGTAATATTTATTCGGTTGCAAAAGACCATTCCAGTAATGAAGAG 1554
Query 1558 GATGTTGATAATGAAGAATCTGAGTCAATGACATCAAACAATGTGACTGGTGTTGTCACA 1617
||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1555 GATGTGGATAACGAAGAATCTGAGCCAATGACATCAAACAATGTGACTGGTGTTGTCAAA 1614
Query 1618 GAAGAACACTCGGATAAGGAAGAGCATGGAAATCATGAAGAGACTGAGCCTTTGACGTCA 1677
||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1615 GAAGAACACTCAGCTAAAGAAGAGCATGGAGATCATGAAGAGACTGAGCCTTTGACGTCA 1674
Query 1678 CTAAACATTTCCAATGAAGAATCTTTATTAGAACACAGTGATAAAGATTCCTCGAAGGTA 1737
|| ||||||||||| |||||| ||| ||||||||||||||||||||| |||| |||| ||
Sbjct 1675 CTGAACATTTCCAAAGAAGAACCTTCATTAGAACACAGTGATAAAGACTCCTTGAAGATA 1734
Query 1738 ACAGAGACTCGTGATACTTCAAATGGGTCACCGGAACTAAAGCACTCAGCTTCTGTAGAA 1797
|||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1735 ACAGAGACTCGTAATACTTCAAATGGATCACCAGAACTAAAGCACTCTGCTTCTGTAGAA 1794
Query 1798 TCTTTTGTAAGCATCAGCAGTGACATCGAGGGCGAAAGTCTTGTTGAAGTATTAAAGCAA 1857
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1795 TCTTTTGTAAGCATTAGCAGTGACATAGAGGGCGAAAGTCTTGTTGAAGTATTGAAGCAA 1854
Query 1858 CAACTAGAGCATGGCAGGAAATCGCTAAGAGATTTGAATAAAGAATTAGAGGAAGAAAGA 1917
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1855 CAACTAGAGCATGGCAGGAAATCCCTAAGAGATTTGAATAAAGAATTCGAGGAAGAAAGA 1914
Query 1918 AATGCCTCAGCCATTGCTACCAATCAAGCAATGGCGATGATCACGCGGTTGCAGGAGGAG 1977
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1915 AATGCCTCAGCCATTGCTACCAACCAAGCAATGGCGATGATTACGCGGTTGCAGGAGGAG 1974
Query 1978 AAAGCAGCTCTCCATATGGAAGCTTTACAATACCTGAGAATGATGGATGAGCAAGCAGAG 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AAAGCAGCTCTCCATATGGAAGCTTTACAATACCTGAGAATGATGGATGAGCAAGCAGAG 2034
Query 2038 CACGACATGGATGCACTTGAGAGAGCAAACGATGTCTTGGCTGATAGGGAAAAGGAGATA 2097
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2035 CACGACATGGATGCACTTGAGAGAGCAAACGATGTCTTGGCTGATAGGGAGAAGGAGATA 2094
Query 2098 CAAGATCTTGAGATGGAGTTAGAATATTATAGAGTAAAATATCCAGATGAGCCAAGAGAA 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 CAAGATCTTGAGATGGAGTTAGAATATTATAGAGTAAAATATCCAGATGAGCCAAGAGAA 2154
Query 2158 GAAATTCTCGCTAGCATGGG-AGTTCTCGGTAATATAGAAGAAACAAGTGTCACCTCACC 2216
|||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||
Sbjct 2155 GAAATTCTCGCTAGCATGGGGA-TTCTCGGTAATACAGAAGAAACAAATGTCACCTCACC 2213
Query 2217 AACTGATGAGACCAGCAATAAGGCTTCAACAGACACCAAACTTACCGGTTCTCCATCAGC 2276
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2214 AACTGATGAGACCAGCATTAAGGATTCAACAGACACCAAACTTACCGGTTCTCCATCAGC 2273
Query 2277 GGAAAATT 2284
||||||||
Sbjct 2274 GGAAAATT 2281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113453231700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5