BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344851
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30900.1 | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 |... 706 0.0
> AT2G30900.1 | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43
| chr2:13149414-13152542 FORWARD LENGTH=1707
Length=1707
Score = 706 bits (382), Expect = 0.0
Identities = 441/468 (94%), Gaps = 10/468 (2%)
Strand=Plus/Plus
Query 282 ATGGGACGCAATTATGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATA 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 ATGGGACGCAATTATGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATA 1179
Query 342 TGAGAAAGCAATGATGACTTGGGCTAAGTGGATTGATCAGAACATTGATCCTTCCAAAAC 401
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1180 TGAGAAAGCAATGATGACTTGGGCTAAGTGGATTGATCAAAATATTGATCCTTCCAAAAC 1239
Query 402 CAAAGTCTTCTTCCAGGGTGTTTCTCCGGACCATGGCCGCGCAAGCGAATGGTCGAAACA 461
||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1240 CAAAGTCTTCTTCCAAGGTATTTCTCCGGACCATGGCCGGGCAAGGGAATGGTCGAAACA 1299
Query 462 AGGTGGCAAAGGCAGTTGCATTGGAGAAACAAAGCCGATTATGGGATCGAAGT-AC-TGG 519
||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||
Sbjct 1300 AGGTGGCAAAGGCAGTTGCATAGGAGAAACAAAGCCGATTATGGGATCGA-GTTACCTGG 1358
Query 520 GC-GGGACCACAC-CGAGCGGAGATGGTGGTGGCAAAAGTGATAAAGACAATGAAGAATC 577
| ||| || ||| | ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1359 -CTGGG-CCGCACGC-AGCCGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATC 1415
Query 578 CGGCGCGGTTAATGGATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCGG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1416 AGGCGCGGTTAATGGATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCAG 1475
Query 638 TATACGGGTTTGGCGGTCACAAGA-TGCCGGATTGTAGCCATTGGTGTCTCTCTGGAGTC 696
||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1476 TATACGGTTTTGGCGGTCACA-GAATGGCGGATTGTAGCCATTGGTGTCTCTCTGGAGTC 1534
Query 697 CCGGATAGCTGGAACCAGCTCTTGTATTCTGAATTGTTTCATTCTTAA 744
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1535 CCGGATAGCTGGAACCAGCTCTTGTATTCTGAGCTGTTTCATTCTTAA 1582
Score = 385 bits (208), Expect = 4e-106
Identities = 264/290 (91%), Gaps = 8/290 (3%)
Strand=Plus/Plus
Query 1 ATGAGAGGTGCTGCTTCGACCGGAGTAGTAAT-GGTCATGGTTATAATGATACTTGTGTT 59
||||||||||||||| | ||||||||||| || |||||||||| ||||||||||||||||
Sbjct 479 ATGAGAGGTGCTGCTCCCACCGGAGTAGT-ATCGGTCATGGTTTTAATGATACTTGTGTT 537
Query 60 GTTAAACCAAACAGAGAGTGCTAGTGTGAATGGTTCATC---A---CAATCACATAGAAA 113
|||||| |||| |||||||||||||| |||||||||||| | | | ||| ||||||
Sbjct 538 GTTAAAACAAATAGAGAGTGCTAGTGCGAATGGTTCATCATTAGGGCTACCACCTAGAAA 597
Query 114 GTTTTGTAATATTTATTTAGGAAGTTGGGTCTATGATAAATCTTACCCTCTCTATGATTC 173
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 GTTTTGTAATATTTATCAAGGAAGTTGGGTCTATGACAAATCTTACCCTCTCTATGATTC 657
Query 174 CAAGACTTGTCCTTTCATCGAGAGACAATTTAACTGCAAGTCCAATGGTCGCCCTGACAA 233
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 658 CAAGAATTGCCCTTTCATCGAGAGACAGTTTAACTGCAAGTCCAATGGTCGCCCTGACAG 717
Query 234 AGAGTACCTCAAGTATCGGTGGCAACCTTCCGGTTGCAATCTCCCCAGAT 283
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 CGAGTACCTCAAGTATCGATGGCAACCTTCCGGTTGCAATCTCCCCAGAT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5