BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344884
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31160.1 | Symbols: LSH3 | Protein of unknown function (DUF6... 1086 0.0
> AT2G31160.1 | Symbols: LSH3 | Protein of unknown function (DUF640)
| chr2:13277811-13278745 FORWARD LENGTH=935
Length=935
Score = 1086 bits (588), Expect = 0.0
Identities = 634/657 (96%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 1 ATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAACCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 ATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAACCTC 152
Query 61 AACATCATCTCAGACAACTCCTCTTCCGTCACCGGAGCCACCGCAGGTGAAGCAACACAA 120
|||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 153 AACATCATCTCAAACAACTCCTCCTCCGTCACCGGAGCCACCGGAGGTGAAGCAACGCAA 212
Query 121 CCACCGTCTTCTTCCTCCTCACCATCGGTGAACTCAAGCCGTTACGAGAACCAGAAGAGG 180
|||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 213 CCACTGTCTTCCTCCTCCTCACCATCGGCGAACTCAAGCCGTTACGAGAACCAGAAGAGG 272
Query 181 AGAGACTGGAACACGTTCGGGCAGTACTTAAGGAACCATCGGCCACCGCTTTCTCTTTCC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 273 AGAGACTGGAACACGTTCGGACAGTACTTAAGGAACCATCGGCCACCGCTTTCGCTTTCC 332
Query 241 CGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAAAACA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 333 CGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAAGACA 392
Query 301 AAAGTTCACACGAACGTTTGTCACTTCTACGGCCATCCTAATCCTCCGGCACCGTGTCCT 360
||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 393 AAAGTCCACACGAACATTTGTCACTTCTATGGCCATCCTAATCCTCCGGCACCGTGTCCG 452
Query 361 TGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTCATCGGTCGTCTTCGAGCTGCC 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 453 TGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTTATCGGTCGTCTTCGAGCTGCC 512
Query 421 TTTGAAGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAGGCTT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TTTGAGGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAGGCTT 572
Query 481 TATCTAAGGGAAGTTAGAGATATGCAGAGCAAAGCTAGAGGTGTTAGCTACGAGAAGAAG 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 573 TATCTAAGGGAAGTTAGAGATATGCAGAGTAAAGCTAGAGGTGTTAGCTACGAGAAGAAG 632
Query 541 AAGCGAAAGCGTCCTCTTCCTCCGTCGTCGGCTTCTTCTTCCTCCGCCGTAGCTAGTCAC 600
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 633 AAGCGAAAGCGTCCTCTTCCTTCGTCGTCGACTTCTTCTTCCTCCGCCGTAGCTAGCCAC 692
Query 601 CAGCAATTTCAAATGCTATCGAGTACTAGTTCTACTTCTCAATTAAAGTTTGAGAAG 657
|||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 693 CAGCAATTTCAAATGCTACCGGGTACTAGTTCTACTACTCAATTAAAGTTTGAGAAG 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5