BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344902
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31310.1 | Symbols: LBD14 | LOB domain-containing protein 14... 850 0.0
> AT2G31310.1 | Symbols: LBD14 | LOB domain-containing protein
14 | chr2:13352917-13353672 FORWARD LENGTH=654
Length=654
Score = 850 bits (460), Expect = 0.0
Identities = 533/568 (94%), Gaps = 5/568 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGGTTTAGGCTCACCATGTGGAGGATGCAAGTTCTTGCGTAGGAAATGTGTAGAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATGGGAGGTTTAGGCTCACCATGTGGAGGATGCAAGTTCTTGCGTAGGAAATGTGTAGAG 128
Query 61 GGTTGTGTATTTGCACCATACTTTTGCTACGAAGAAGGATCTTCTAATTTTTCAGCCATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 129 GGTTGTGTATTTGCACCATACTTTTGCTACGAAGAAGGATCTTCTAATTTTGCAGCCATT 188
Query 121 CACAAAGTGTTTGGAGCCAGCAACTTCTCTAAACTCATTTCTCATCTCCCTGATCATGAC 180
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 189 CACAAAGTGTTTGGAGCTAGCAACTTCTCTAAGCTCATTTCTCATCTCCCTGATCATGAC 248
Query 181 CGATGTGACGCCGTACGAACCATCTCTTACGAGGCCCACTCTCGTCTCCACGATCCTATT 240
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 249 CGATGTGACGCCGTACGAACCATCTCTTACGAGGCTCACTCTCGTCTCCATGATCCTATT 308
Query 241 TACGGTTGCGTCTCCCAAATCTTCTCCCTCCAACAACAGGTTGTTAGTTTACAAGCTCAA 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 309 TACGGCTGCGTCTCCCAAATCTTCTCCCTCCAACAACAGGTTGTTAGTTTACAAGCACAA 368
Query 301 GTGGTCCTACTTAGAGAAGAAGCTTCTAGAAGGTCCCCTCAAGAGGATCCTGGTTGCAAT 360
||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||
Sbjct 369 GTGGTTCTACTTAGAGAAGAAGCTTCGAGAAGGTTCCCTCAAGATGATCCTGGTTGTAAT 428
Query 361 ATGAAGCAGCAAGAAAAACTTATTGCTCAGCAAATGCCACAAGATCTTCACAATTGGTTT 420
|||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 429 ATGAAGCAACAAGAAAAGGTTCTTGCTCAACAAATGCCACAAGATCTTCACAATTGGTTT 488
Query 421 CACCAAGGAATCTTGGACTCAGACCTCGACCTAATGAGTGGTACTCCACGCGACCATGGG 480
|||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||| |
Sbjct 489 CACCAAGGAATCTTGGACTCAGACTTCGACCCAATGAGTGGTACTACACGCGACAATGAG 548
Query 481 CGATCCTTGGAT-AGGAATGAGTCTCTTTGTAGCTCAAATGAATCTCTT--T-ACTATCA 536
|| ||| ||||| | |||||||||| |||||||||||||||||| ||| | |||| ||
Sbjct 549 CGGTCCATGGATCAT-AATGAGTCTCCTTGTAGCTCAAATGAATCACTTAATTACTACCA 607
Query 537 AGAGGTCAATTTTCCTTGGTCTGTTTGA 564
|||||||||||||||||||||||||||
Sbjct 608 GGAGGTCAATTTTCCTTGGTCTGTTTGA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5