BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344912
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31430.1 | Symbols: | Plant invertase/pectin methylesterase... 815 0.0
> AT2G31430.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:13396192-13397162 FORWARD
LENGTH=892
Length=892
Score = 815 bits (441), Expect = 0.0
Identities = 510/543 (94%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 1 ATGGCCACAATGCTAATAAACCACATG-TGTTT-CTTAACGTCGTTGAT-ATTGATCGCG 57
||||||||||||||||||||||||||| | ||| ||| ||||||||| | || | ||| |
Sbjct 102 ATGGCCACAATGCTAATAAACCACATGCT-TTTCCTT-ACGTCGTTGTTAATAG-TCGTG 158
Query 58 TTTCCAGTAGCAAACGCTATTCCAGCCAGAGACATTGACAAGCTATGCAAAGAGACTACT 117
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 159 TTTCCAGTAGCAAACGCGATTCCAGCCAGAGACATTGACAAGTTATGCAAAGAGACAACT 218
Query 118 GATGTGCCCTTCTGCCTCCAATACATTGGGTCGGATCCACGAATACCAGCCGCACGTGAC 177
|||||||||||||||||| ||||| ||||| | |||||||| ||||||||||||||||||
Sbjct 219 GATGTGCCCTTCTGCCTCAAATACCTTGGGACAGATCCACGTATACCAGCCGCACGTGAC 278
Query 178 CTCAGTGACGTTCTTTTAATCGCGATAACGCACTCAAAAATGCAAGTGGATGATGCAACC 237
|||| |||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 279 CTCACTGACGTGCTTTTAATTGCGATAACGCAGTCAAAAATGCAAGTGGATGACGCAACC 338
Query 238 ACTCATATTGACAGAGTCCGTCGAAAGTTCAGTGGTCCGAATGGGAAGAGACGGATCGAG 297
||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct 339 ACTCATATTGATAGAGTCCGTCGAAAGTTCAATGGTCCTCATGGGAGGAGACGGATCGAG 398
Query 298 GTTTGCAAGACGAATTACGGAATAGCTTCGGCTAGGTTTCACACTGCTTGGGAACTTGGA 357
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 399 GTTTGCAAGACGAATTACGGAATTGCTTCGGCAAGGTTTCACACAGCTTGGGAACTTGGA 458
Query 358 CTTCAAAAATCGTTTTGGGATGTGGAAAAACTGGCAAGGATTGGCACCAACGCTGTGATC 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 459 CTTCAAAAATCGTTTTGGGACGTGGAAAAACTGGCAAGGATTGGCACCAACGCTGTGATC 518
Query 418 GACTGCGAAAACGTATGGAGAAGGGATGGTCCGATACAAACGTCTCCTCTCACTTTCTAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACTGCGAAAACGTATGGAGAAGGGATGGTCCGATACAAACGTCTCCTCTCACTTTCTAT 578
Query 478 AACATGAATGTTTTCAAGCTATCTGGAATCATTCTTCTTATTTTCGACAAGCTTGTGACC 537
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 579 AACATGAATGTTTTCAAGCTTTCTGGAATCATTCTTCTTATTTTCAACAAGCTTGTGACC 638
Query 538 TAA 540
|||
Sbjct 639 TAA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25870585705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5