BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344921
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31580.1 | Symbols: | tRNAHis guanylyltransferase | chr2:13... 2555 0.0
AT2G32320.2 | Symbols: | tRNAHis guanylyltransferase | chr2:13... 983 0.0
> AT2G31580.1 | Symbols: | tRNAHis guanylyltransferase | chr2:13440909-13445851
REVERSE LENGTH=1946
Length=1946
Score = 2555 bits (1383), Expect = 0.0
Identities = 1506/1566 (96%), Gaps = 6/1566 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATAGCAAATACGAGTATGTGAAGTCATTCGAATTGGAGGATGAAGTCATGCTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 156 ATGGCGAATAGCAAATACGAGTATGTGAAATCATTCGAATTGGAGGATGAAGTCATGCTT 215
Query 61 CCTAACTTGATGGTTGTTCGAATCGATGGTCGTCATTTTTCTAGATTTTCCCAAGTTCAT 120
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 216 CCTAACTTGATGGTTGTTCGAATCGATGGTCGTGATTTTTCTAGATTTTCTCAAGTTCAT 275
Query 121 GAGTTTGAGAGGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTGCG 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GAGTTTGAGAAGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTGCG 335
Query 181 GTTTTGGAAGAGTTTCCTGACATCATCTTTGCTTATGGATATAGTGACGAATACAGCTTT 240
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 336 GTTTTGGAAGAGTTTCCTGACATAATCTTTGCTTATGGATACAGTGACGAATACAGCTTT 395
Query 241 GTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTCTGTCGTTGGTA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 396 GTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTTTGTCGTTGGTA 455
Query 301 GCTTCGTTCGTTGCTGCGA-TTTATGTAACAAAATGGAAAGACTTCTTTCCCCAAAAG-A 358
||||| ||| ||||||| | |||||||||||||||||||||| || ||||||| |||| |
Sbjct 456 GCTTCTTTCTTTGCTGC-AGTTTATGTAACAAAATGGAAAGAGTTTTTTCCCC-AAAGAA 513
Query 359 AATTAGAATATGCTCCTTCATTCCGTTCAAAAGTTGTAAGTTGTGCATCCGCAGAGGTTC 418
||||| ||||||||| || ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 514 AATTATTATATGCTCCGTCCTTCAGTTCAAAAGTTGTAAGTTGTGCATCAGCAGAGGTTC 573
Query 419 TTCAAGCTTATGTCGCATGGAGACAGCATGACTGCCACGCCAATAATCAGTATGACACTT 478
|||| |||||| |||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 574 TTCAGGCTTATCTCGCGTGGAGACAACAGGACTGCCACGCCAACAATCAGTATGACACTT 633
Query 479 GTTTCTGGATGTTAGTTAAAAGTGGAAAGAGCATAAGTGAAACACAAGAGATTCTAAAGG 538
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 634 GTTTCTGGATGTTAGTTAAAAGTGGAAAGAGCGTAAGTGAAACCCAAGAGATTCTAAAGG 693
Query 539 ATACACAAAAACAGCAGAAAAACGAGCTTCTCTTTCAGAAATTTGGTATCAATTACAAAA 598
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 694 ATACACAAAAACAGCAGAAAAATGAGCTTCTCTTTCAGAAATTTGGTATCAATTACAAGA 753
Query 599 CGCTTCCTGAATTGTTTCGCCAAGGATCGTGTCTTTTCAAGAAAAAGGTAGAAGAAACTG 658
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 754 CGCTTCCTGAATTGTTTCGCCAAGGATCTTGTCTTTTCAAGAAAAAGGTGGAAGAAACTG 813
Query 659 TAAAGCATGATGAGAATGGAAATCCTGTAAAAAGATTGAGGAGAAAGGCTGTTTTTGTAC 718
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TAAAGCATGACGAAAATGGCAATCCTGTAAAAAGATTGAGGAGAAAGGCTGTTTTTGTAC 873
Query 719 ATTCGGAGAATATTGCCGGAAGAAGCTTTTGGAATGAGCAGCCCTCTCTATGTAATGATC 778
|||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 874 ATTCAGAGAATATTGCAGGAAGAAGCTTTTGGAATGAGCAGCCCTCTCTATATAATGATC 933
Query 779 TTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATTAGGTCGTTTCAGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATTAGGTCGTTTCAGT 993
Query 839 TTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGATGGCTGTCATTTTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 994 TTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGATGGCTGTCACTTTC 1053
Query 899 ACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAAACTTA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAAACTTA 1113
Query 959 TGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATTCACTTTGCCTATGGTG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATTCACTTTGCCTATGGTG 1173
Query 1019 TCAGTGATGAGTACAGCTTTGTTTTGAAGAAAGAATCTGAGCTCTACAAAAGACAATCCA 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TCAGTGATGAGTATAGCTTTGTTTTGAAGAAAGAATCTGAGCTCTACAAAAGACAATCCA 1233
Query 1079 GTAAAATAATATCCGCAATCACATCCTTCTTTACATCGACGTATGTGTTACAATGGGGAG 1138
|||| |||||||| ||| || |||||||||||||||| || |||||||||||||||||||
Sbjct 1234 GTAAGATAATATCTGCAGTCGCATCCTTCTTTACATCCACATATGTGTTACAATGGGGAG 1293
Query 1139 AATTTTTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCGATGGACGAGCTGTATGCT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 AATTTTTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCGATGGACGAGCTGTATGCT 1353
Query 1199 ATCCAACACACAATATTCTTTTGGATTATCTGGCCTGGAGACAAGTTGACTGCCACATCA 1258
|||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1354 ATCCAACATACAATATTCTCTTGGATTATCTGGCGTGGAGACAAGTTGACTGCCACATCA 1413
Query 1259 ATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAACCAAAACTCAAT 1318
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1414 ATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAACAAAACTCAAT 1473
Query 1319 CCCAAGATTACTTAAAGGGTACCCAAACACGAGaaaaaaaTGAGCTGCTTAGCCGTCAAT 1378
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1474 CCCAAGATTACTTAAAGGGTACACAAACACGAGAGAAAAATGAGCTGCTTAGCCGTCAAT 1533
Query 1379 TTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAATGGGTTCTTCTGTTTTCCGCC 1438
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1534 TTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAATGGGTTCTTCGGTTTTCCGTC 1593
Query 1439 GAAAGGAAGCTGAGAATGGAGTAGTTTCAGGGAAGAAACTGGAAGGAGAAGTGGTCGTGG 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 TAAAGGAAGCTGAGAATGGAGTAGTTTCAGGGAAGAAACTGGAAGGAGAAGTGGTCGTGG 1653
Query 1499 ATCATTGCAACATCATCGAACA-TAGTTTCTGGGAAGAACACCCACACATTCTTAGCTAC 1557
||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 1654 ATCATTGCAACATCATCGAACGCT-GTTTCTGGGAAGAACACCTACACATTCTTAGCTAC 1712
Query 1558 TCATAA 1563
||||||
Sbjct 1713 TCATAA 1718
> AT2G32320.2 | Symbols: | tRNAHis guanylyltransferase | chr2:13726819-13731767
FORWARD LENGTH=2165
Length=2165
Score = 983 bits (532), Expect = 0.0
Identities = 813/943 (86%), Gaps = 41/943 (4%)
Strand=Plus/Plus
Query 649 GAAGAAACTGTAAAGCATGATGAGAATGGAAATCCTGTAAAAAGATTGAGGAGAAAG-GC 707
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| |
Sbjct 897 GAAGAAACTGTAAAGCATGATGAGAATGGAAAGCCTGTAAAACGATTGAGGAG-AAGAGA 955
Query 708 TGTTTTTGTACATTCGGAGAATATTGCCGGAAGAAGCTTTTGGAATGAGCAGC-CCTCTC 766
||| || ||||| || ||| |||| ||||||||||||||||||||||| | ||||||
Sbjct 956 AACTTTAGTGCATTCAGAAAATGTTGCTGGAAGAAGCTTTTGGAATGAGCA-CTCCTCTC 1014
Query 767 TAT-GTAATGATCTTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATT 825
| | ||| |||||||| || || | ||||||||||| |||||||||||||||| | ||
Sbjct 1015 T-TCATAAAGATCTTGGACATTTTGCAAAAGACATTGGCAAAATTGAACCAGATTATGTT 1073
Query 826 AGGTCGTTTCAGTTTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGAT 885
| ||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||
Sbjct 1074 AAGTCGTTTCAGTTTGAGAGTAGATTATTACCTTTAACTTGGGTTGTGGTTAGGATTGAT 1133
Query 886 GGCTGTCATTTTCACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAA 945
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1134 GGCTGCCATTTTCACAGATTTTCTGAAGTTCATGAATTTGAGAAGCCAAATGATGAGCAA 1193
Query 946 GCTCTGAAACTTATGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATT-CA 1004
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 1194 GCTCTGAAACTTATGAATTCATGTGCAGTGGCTGTTCTTGAGGAGTTTCAGGATATTGC- 1252
Query 1005 CTTTGCCTATGGTGTCAGTGATGAGTACAGCTTTGTT-TTGAAGAA-AGAATCTGAGCTC 1062
||||||||| || || |||||||||| |||||||||| || ||||| | ||||||||||
Sbjct 1253 CTTTGCCTACGGCGTTAGTGATGAGTTCAGCTTTGTTCTT-AAGAATA-AATCTGAGCTT 1310
Query 1063 TACAAAAGACAATCCAGTAAAATAATATCCGCAATCAC-ATCCTTCTTTACATCGACGTA 1121
||||||||||| |||||||| |||||||| ||| | | ||||||||| |||||||| ||
Sbjct 1311 TACAAAAGACAGTCCAGTAAGATAATATCTGCAGT-AGTATCCTTCTTCACATCGACTTA 1369
Query 1122 TGTGTT-ACAATGGGGAGAATTTTTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCG 1180
|| | | | |||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1370 CATGATGAGA-TGGGGAGATTTTTTCCCTCACAAAAAATTGAAGTACCCTCCATCATTCG 1428
Query 1181 ATGGACGAGCTGTATGCTATCCAACA-CACAATATTCTTTTGGATTATCTGGCCTGGAGA 1239
||||||||||||| |||||||||||| || | |||||| |||||||||| || ||||||
Sbjct 1429 ATGGACGAGCTGTTTGCTATCCAACATCAGA-TATTCTCCTGGATTATCTAGCTTGGAGA 1487
Query 1240 CAAGTTGACTGCCACATCAATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCT 1299
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1488 CAAGTCGACTGCCATATCAACAATCAGTATAATACATGTTTCTGGATGCTTGTTAAGTCT 1547
Query 1300 GGAAAAACCAAAACTCAATCCCAAGATTACTTAAAGGGTACCCAAACACGAGaaaaaaaT 1359
||||||| ||||| |||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 1548 GGAAAAAGCAAAATTCAAGCCCAGGATTACTTAAAGGGTACCCAGACACGAGAAAAAAAC 1607
Query 1360 GAGCTGCTTAGCC-GTCAATTTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAAT 1418
||| | ||||||| | |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1608 GAGTTACTTAGCCAG-CAATTTGGAATTGAGTACAATTCATTACCTGTAATCTTCCGCAT 1666
Query 1419 GGGTTCTTCTGTTTTCCGCCGAAAG--G-A--A-GCTG--A--GA--A---TGGAGTAGT 1463
||||||||| |||||||||| |||| | | | | || | || | ||||| |||
Sbjct 1667 GGGTTCTTCCGTTTTCCGCCTAAAGACGCAGGAAGGTGTTACAGAGGAGAATGGAGAAGT 1726
Query 1464 TTCAGGGAAGAAACTGGAAGGAGAAGTGGTCGTGGA-TCATTGCAA-CATCATCGAACA- 1520
|||||| ||| || |||||| |||||||| ||| || | ||| ||| ||| ||||| ||
Sbjct 1727 TTCAGGAAAGCAAGTGGAAGCAGAAGTGGGCGTAGACT-ATT-CAAACATTATCGACCAA 1784
Query 1521 TAGTTTCTGGGAAGAACACCCACACATTCTTAGCTACTCATAA 1563
| |||||||| || |||| || ||||||||||||| ||| |||
Sbjct 1785 T-GTTTCTGGCAACAACATCCTCACATTCTTAGCTTCTCCTAA 1826
Score = 675 bits (365), Expect = 0.0
Identities = 559/653 (86%), Gaps = 12/653 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAATAGCAAATACGAGTATGTGAAGTCATTCGAATTGGAGGATGAAGTCATGCTT 60
||||||||||| || |||||||| ||||||||||||||| | || || ||||| ||| ||
Sbjct 213 ATGGCGAATAGTAAGTACGAGTACGTGAAGTCATTCGAAGTAGAAGACGAAGTTATGTTT 272
Query 61 CCTAACT-TGATGGTTGTTCGAATCGATGGTCGTCATTTTTCTAGATTTTCCCAAGTTCA 119
|| || | |||| || | || |||||||| ||| ||||||| |||||||| ||||||||
Sbjct 273 CCCAA-TCTGATAATTATCCGTATCGATGGCCGTGATTTTTCCAGATTTTCTCAAGTTCA 331
Query 120 TGAGTTTGAGAGGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTGC 179
||||||| | |||||||||||| ||| | || |||||||||||||||||| || || |
Sbjct 332 CAAGTTTGAAAAGCCTAATGATGAGACATCTCTAAATTTGATGAATTCATGTGCATCTTC 391
Query 180 GGTTTTGGAAGAGTTTCCTGACATCA-TCTTTGCTTATGGATATAGTGACGAATACAGCT 238
|||||| | ||||| |||||| || | ||||||| ||||||||||||||||| |||||||
Sbjct 392 GGTTTTAGTAGAGTATCCTGATAT-AGTCTTTGCATATGGATATAGTGACGAGTACAGCT 450
Query 239 TTGTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTCTGTCGTTGG 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 451 TTGTATTCAAGAAAGCATCAAGATTCTACCAGAGACGAGCCAGTAAGATTCTGTCTTTGG 510
Query 299 TAGCTTCGTTCGTTGCTGCGATTTATGTAACAAAATGGAAAGACTTCTTTCCCCAAA-AG 357
|||| || || |||||||| | |||||||| ||||||||||| |||||||| || | |
Sbjct 511 TAGCCTCATTTTTTGCTGCGGTCTATGTAACGAAATGGAAAGAGTTCTTTCCTCATACA- 569
Query 358 AAATTAGAATATGCTCCTTCATTC-CGTTCAAAAGTTGTAAGTTGTGCATCCGCAGAGGT 416
||||||||||||||||||||||| | |||||||||||||||||||||||| | ||||||
Sbjct 570 AAATTAGAATATGCTCCTTCATTTGC-TTCAAAAGTTGTAAGTTGTGCATCGGTAGAGGT 628
Query 417 TCTTCAAGCTTATGTCGCATGGAGACAGCATGACTGCCACGCCAATAATCAGTATGACAC 476
|||||||||||| | || |||||||| |||||||||||| || |||||||||||||||
Sbjct 629 TCTTCAAGCTTACCTTGCGTGGAGACAACATGACTGCCACATCAGTAATCAGTATGACAC 688
Query 477 TTGT-TTCTGGATGTTAGTTAAAAGTGGAAAGAGCATAAGTGAAACACAAGAGATTCTAA 535
||| || ||||||||||| ||||||||||||| | |||||||||| || |||||| | |
Sbjct 689 ATGTCTT-TGGATGTTAGTAAAAAGTGGAAAGACCTTAAGTGAAACTCAGGAGATTTTGA 747
Query 536 AGGATACACAAAAACAGCAGAAAAACGAGCTTCTCTTTCAGA-AATTTGGTATCAATTAC 594
|||||||||| ||||| |||| ||| |||||||| ||||| | |||||||||| |||||
Sbjct 748 AGGATACACAGAAACAACAGAGAAATGAGCTTCTTTTTCA-ACAATTTGGTATTAATTAT 806
Query 595 AAAACGCTTCCTGAATTGTTTCGCCAAGGATCGTGTCTTTTCAAGAAAAAGGT 647
|||| |||||||| ||| ||||| |||||||| || ||||| |||| ||||||
Sbjct 807 AAAATGCTTCCTGTATTATTTCGTCAAGGATCATGCCTTTTTAAGACAAAGGT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5