BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344928
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
AT3G32960.1 | Symbols: | Domain of unknown function (DUF1985) ... 276 1e-73
> AT3G32960.1 | Symbols: | Domain of unknown function (DUF1985)
| chr3:13499677-13500415 FORWARD LENGTH=645
Length=645
Score = 276 bits (149), Expect = 1e-73
Identities = 188/207 (91%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 59 TGCTACAAACAGCCTACAGCCGAATCAGTTTAATAGAGAAGCCGACTGCATTCTTGTGTG 118
||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 422 TGCTACAAACAACCTACAACCGAATCAGTTTAATAGAGAGGCCTACTGCATTCTTGTGTG 481
Query 119 AGAAATACACGAGCTTACCATCACCGCAACTTTCTCAGATACTGAATATTGAAGCATCTA 178
|||||||||||||| |||||||||| ||||||||||| |||| ||| ||||||||||| |
Sbjct 482 AGAAATACACGAGCCTACCATCACCACAACTTTCTCAAATACAGAACATTGAAGCATC-A 540
Query 179 -ATCATCTGAATGTATTTTGCATCTCACCTTCAAAACCTGATGATCCTGAAGATAAAGTT 237
|||||| ||| || |||| ||||| ||| |||| ||||||||||| |||||||||||||
Sbjct 541 TATCATCCGAAGGTGTTTTTCATCTTACCGTCAATACCTGATGATCTTGAAGATAAAGTT 600
Query 238 TCATTGGAAGACGAAGATGATCCAGAA 264
|||||||||||||||||||||||||||
Sbjct 601 TCATTGGAAGACGAAGATGATCCAGAA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16135947429
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5