BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg344930

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31710.1 | Symbols:  | Vacuolar ATPase assembly integral mem...   466    6e-131


> AT2G31710.1 | Symbols:  | Vacuolar ATPase assembly integral membrane 
protein VMA21-like domain | chr2:13481793-13483124 REVERSE 
LENGTH=678
Length=678

 Score =  466 bits (252),  Expect = 6e-131
 Identities = 297/319 (93%), Gaps = 2/319 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTGGGGTTATGCAGAAATTCCTTATTGCATCAATGTTCATGTGGATTCTTCCTATT  60
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  97   ATGGCTGGGGTTATGCAGAAGTTCCTTATTGCATCAATGTTTATGTGGATTCTTCCTATT  156

Query  61   GCGATATTATATGGATTCAACAATGATTTGCTTCCTGGTTCAACAACATTGTCTCCACAT  120
            || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  157  GCAATATTATATGGATTCAACAATGATTTGCTTCCTGGGTCAACAACGTTGTCTCCACAT  216

Query  121  TCTCTGACTCTACTTAGTGGATTTCTTGCGGTGGTATCAGTCAATGTAGTGATTGT-TTT  179
            |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct  217  TCTCTGACACTACTGAGTGGATTTCTTGCCGTGGTATCAGTCAATGTAGTTATTGTGTTT  276

Query  180  CTACATCTGTCTGGCCTTGAAAGAACCTGTGGATAAACACAAGCCAGACCCTTCTTTTGT  239
             ||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||
Sbjct  277  -TACATCTGTCTGGCCCTGAAAGAACCTGCGGATAAACACAAGCCAGACGCTTCGTTTGT  335

Query  240  GGCAGAGGCCAAAGATAGTGTGAAGAAATTGACATCAGGAGTCACAAGTACAGACCCTGC  299
             |||||||| ||||| ||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct  336  TGCAGAGGCTAAAGACAGTGTTAAGAAATTGACATCAGGAGTCACAAATACTGACCCTGC  395

Query  300  GCTCAAGAAACAAGAGTGA  318
            ||| |||||||||||||||
Sbjct  396  GCTGAAGAAACAAGAGTGA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5