BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344960
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31990.1 | Symbols: | Exostosin family protein | chr2:13611... 1910 0.0
> AT2G31990.1 | Symbols: | Exostosin family protein | chr2:13611351-13613573
REVERSE LENGTH=1611
Length=1611
Score = 1910 bits (1034), Expect = 0.0
Identities = 1284/1400 (92%), Gaps = 35/1400 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGAAAAAA-CAACCActcttttacttttcctctctctcctcaccatctctctgct 59
||||| ||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 67 ATGGAAGAAAAAACCAACCACTCTTTTACTTTTCCTTTCTCTTCTCTCCATCTCTCTGCT 126
Query 60 tctccttcgtctctccCAAGACAAAATCATACTCATcaccaccacc---a-c-ca-ccac 113
|||||||||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 127 TCTCCTTCGTCTCTCCCAAGACAAAATCATACTCATCACCACCACCAAAACCACAGCCAC 186
Query 114 cTC-CGACTCCGATCATCAACGCCGT--C--A----C----GAC---CCGTGTCTCGGTC 157
| | || |||||||||||||| || | | | ||| |||||||||| |
Sbjct 187 CACTGGA-ACCGATCATCAACGCAGTCACAAATCTTCTGAGGACGATACGTGTCTCGGAC 245
Query 158 GCTACATATATATCCATAATCTACCTTCTCGATTCAATCTTGAAATCATTAAAGACTGCA 217
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 246 GCTACATATATATCCACAATCTACCTTCTCGATTCAATCTTGAAATCATCAAAGATTGTA 305
Query 218 AGTCTATTACAAGACCAAAAGACAAGATCAGTATGTGTAAGTATCTCGAAAACTCCGGAA 277
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 306 AGTCTATTACAAGACCAAAGGACAAAATCAGTATGTGTAAGTATCTCGACAACTCCGGAT 365
Query 278 TCGGACCTTTAATCGGCGGTGACGGTTCTGACTACTCTCCGAGCTGGTACGCGACTAATC 337
|||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 366 TCGGACCTTTGATCGGCGGTAAAAGTTCTGACTACTCTCCGAGCTGGTACGCTACTAATC 425
Query 338 AGTTCATGCTCGAAGTGATTTTTCACGAGAAAATGAAGAGATATGAGTGCTTGACGAGAA 397
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 426 AGTTCATGCTCGAAGTGATTTTTCACGAGAAAATGAAGAGTTACGAGTGCTTGACGAGAA 485
Query 398 ACTCGTCGCTGGCTTCAGCTATTTACGTACCTTATTATGCTGGTCTCGATTTCCGGCGAC 457
| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 486 ATTCTTCACTGGCTTCAGCTATTTACGTACCTTATTATGCTGGCCTCGATTTCCGGCGAC 545
Query 458 ATTTACGGCGGCGTAACGTTGCTGCGAGAGACGCCGCCGGGAAGGAACTTGTTAAATGGC 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ATTTACGGCGGCGTAACGTTGCTGCGAGAGACGCCGCCGGGAAGGAACTTGTTAAATGGC 605
Query 518 TTAAAAATCAACCTCAGTGGAAAGATATGTCAGGTAGAGACCATTTCCTCGTAACCGGTC 577
| || || |||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 606 TCAAGAAGCAACCTCAGTGGAAAGATATGTCAGGTAAAAACCATTTCCTTGTAACCGGTC 665
Query 578 GGATTTCACGAGATTTCCGGCGAAACTCCGACAATAAGTCCGCATGGGGAACCAACTTTA 637
|||||||||||||||||||||||||||||| || || ||| ||||||||||||||||| |
Sbjct 666 GGATTTCACGAGATTTCCGGCGAAACTCCGGCAGTAGGTCAGCATGGGGAACCAACTTCA 725
Query 638 TGCTCTTACCGGAGTCGCTAAACCTCACTTTCCTCACCATTGAACGAAGTCTAACGAGCC 697
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 726 TGCTCTTATCTGAGTCGCTAAACCTCACTTTCCTCAGCATTGAACGAAGTCTAACGAGCC 785
Query 698 ACAACGAGTTTGCAATTCCTTATCCCACTTACTTTCACCCTACGTCAACCTCCGAGATCC 757
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 786 ACAACGAGTTCGCAATTCCTTATCCTACTTACTTTCACCCTACGTCAACCCCCGAGATCC 845
Query 758 -TCCGCTGGCAAGACAAGATCAGGCTCACTAACCGGACGATCCTCTTCTCATTCGCCGGA 816
|| | |||||||| ||||||||||| || ||||||||| ||||||||||||| ||||||
Sbjct 846 TTCAG-TGGCAAGAAAAGATCAGGCTTACAAACCGGACGGTCCTCTTCTCATTTGCCGGA 904
Query 817 GCTCAAAGACCAATTAGAAACCAGAACGGTTTGGTTCGCACTCAAGTTATAAAACAATGC 876
||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 905 GCTCAAAGACCAAGCAGAAACCAGAACGGTGTGGTTCGCACTGAAGTTATAAAACAATGC 964
Query 877 AAGAGCTCATCTAATACGTGTAGGTTTCTTGACTGTGACGTCAAAGCCAATATTAGCTGC 936
||||| |||||||| ||||||||||||||||||||||||||||| | ||| | ||||||
Sbjct 965 AAGAGTTCATCTAAAACGTGTAGGTTTCTTGACTGTGACGTCAATG-CAA-A-TAGCTGT 1021
Query 937 GATGATCCGATCAGTCTGATGAAACTTTTCGAGAGTTCAG-TTTTCTGCTTACAACCACC 995
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1022 GATGATCCGATCAGTCTGATGAAACTTTTCGAGAGTTC-GACTTTCTGCTTACAACCGCC 1080
Query 996 GGGTGATTCGTTAACCAGAAGATCGGTATTTGATTCAATCTTGGCTGGTTGTATTCCGGT 1055
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1081 GGGTGATTCGTTGACCAGAAAATCGGTATTTGATTCAATCTTGGCTGGTTGTATACCGGT 1140
Query 1056 TTTCTTTAACCAAGGTAGCGCATACAAGCAATATAGATGGCACATACCTAAGAACAATAG 1115
||||||||||||||| || ||||||||||||||| |||||||||||||||||| | |||
Sbjct 1141 TTTCTTTAACCAAGGAAGTGCATACAAGCAATATTTATGGCACATACCTAAGAATAGTAG 1200
Query 1116 CGAATATTCGGTTTATATACCGGTTAAGGAGCTGAGAACCGGGGGAAAGAACAAAATCGA 1175
| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 CAAATATTCTGTTTATATAACGGTTAAGGAGCTGAGAACCGGTGGAAAGAACAAAATCGA 1260
Query 1176 AGAGATTTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGAGATTTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAG 1320
Query 1236 ATTGATTCCGAAGATTGTGTATAG-TAAACCAAACCGGAACAAACCAGATGGAGAGATTC 1294
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1321 ATTGATTCCGAAGATTGTGTAT-GCTAAACCAAACCGGAACAAACCGGATGGAGAGATTC 1379
Query 1295 TTGAAGATGCTTTTGATGTTGCTGTGAAGGGAGTGGTTA-AGGGAATAGAAGGGATAAGG 1353
|||||||| |||||||||||||||||||||||||| | | || |||||||||||||||||
Sbjct 1380 TTGAAGATTCTTTTGATGTTGCTGTGAAGGGAGTGCT-AGAGAGAATAGAAGGGATAAGG 1438
Query 1354 AGAAAAGAATTCAAGACTGA 1373
||||| |||||||| |||||
Sbjct 1439 AGAAACGAATTCAAAACTGA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5