BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344992
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32340.1 | Symbols: | TraB family protein | chr2:13732247-1... 809 0.0
AT1G05270.1 | Symbols: | TraB family protein | chr1:1531641-15... 359 3e-98
> AT2G32340.1 | Symbols: | TraB family protein | chr2:13732247-13734534
FORWARD LENGTH=1256
Length=1256
Score = 809 bits (438), Expect = 0.0
Identities = 522/562 (93%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 487 AAGGCCGCCAAGAAGCTTGAAGTTTTTCCTGGTGCTGAATTTCGTGTGGCATTTGAAGAG 546
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 526 AAGGCCGCCAAGAAGCTTGAGGTTTTTCCTGGTGCTGAATTTCGTGTGGGATTTGAAGAG 585
Query 547 GCAAACAAATATGGTGGC-GCAGTGTTTCCTGGCGATCGTC-CAGTACAGATCACGCTAC 604
|||||||||||||||||| | |||||||| ||||||||| | |||||||||||||| |||
Sbjct 586 GCAAACAAATATGGTGGCAG-AGTGTTTCTTGGCGATCG-CTCAGTACAGATCACGTTAC 643
Query 605 AGAGAACATGGGGTAAAATGCCTCTATGGCACAAAATAAAACTAGTGTACAGCATAGTGT 664
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 644 AGAGAACATGGGGTAAGATGCCTCTATGGCATAAAATAAAACTAGTGTATAGCATAGTAA 703
Query 665 CTCAAGCTGTCTTTCTGCCGAAACCC-GAGGAACTTGAGAAGATGCTGAAAGACATGAGC 723
||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 704 GTCAAGCTGTCTTTCTGCCG-AACCCTAAGGAACTTGAGAAGATGCTGAAAGACCTGGGC 762
Query 724 GATGCTGATATGCTGACATTGGTGATTCAAGAAATGAGCAAGGAATTTCCGTCTCTCATG 783
|||| |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 763 GATGGGGATATGCTGACATTGGCGATTCAAGAAATGAGCACGGAATTTCCGACTCTCATG 822
Query 784 GAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATTATTTGTTGAGACTTGCAAGT 843
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 823 GAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATCAATTGTTGAGAATTGCAAGT 882
Query 844 GAGCATAGTTCAGTCGTGGCAGTTGTCGGTAGAGGGCATCTTCAAGGGATCAAGAAGAAT 903
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 883 GAGCATAGTTCAGTCGTGGCAGTTGTGGGTAGAGGACATCTTCAAGGGATCAAGAAGAAT 942
Query 904 TGGAACCAACCTATAAACATAAAGGAACT-ATTGGAGTTACCGACAAATGAATCGATTTT 962
||||||||| ||||||||||||||||||| || ||||||||||||||||||||| || ||
Sbjct 943 TGGAACCAAACTATAAACATAAAGGAACTGAT-GGAGTTACCGACAAATGAATCCATATT 1001
Query 963 TACTGTAAAGAATATTCTGAAATATCTGGTGGTTGCAGTCGCCGGGACAGCCATAGTTTC 1022
||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||
Sbjct 1002 TACTGTAAAGAATATTCTGAAATATATGGTGGTTGTAGTCGTTGGAACAGCCATAGTTTC 1061
Query 1023 CGGCATGTATCTTGCTAAGTAA 1044
||| ||||||||||||||||||
Sbjct 1062 CGGAATGTATCTTGCTAAGTAA 1083
Score = 344 bits (186), Expect = 9e-94
Identities = 268/305 (88%), Gaps = 15/305 (5%)
Strand=Plus/Plus
Query 198 TTCGATCGGTGAAAGTGGTGATGATGATATCTGTGGTGTAGCGGATTATGTTGA--GTGT 255
|||||| |||| |||||||||| |||||| || | |||||| ||||||||||| ||||
Sbjct 129 TTCGATATGTGATAGTGGTGATGGTGATATATGCGCTGTAGCAGATTATGTTGAGTGTGT 188
Query 256 -GCGTTTGAGACGAAGACGGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTAT 314
||| || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GGCG-GTG-GA-GACGACGGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTAT 245
Query 315 GGTTCTAACGTGTGAGTCCACAGTTGAAGGTGGATCTTGTGATGTTTACTTGGTTGGCAC 374
|||||||||||| || ||||||| ||| ||||||||||||||||| ||||| ||||||||
Sbjct 246 GGTTCTAACGTGCGAATCCACAGCTGAGGGTGGATCTTGTGATGTGTACTTAGTTGGCAC 305
Query 375 TGCTCA--T------G-AATCATGTCGAGAAGTTGAAACTGTAATCAGATCCTTGAAACC 425
|||||| | | |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 306 TGCTCACGTATCACAGGAATCATGTCGAGAAGTTGAAGCTGTAATCAGCGCCTTGAAACC 365
Query 426 GCAGGCTGTCTTTGTGGAGTTGTGTACAAGTCGATTGTCTATTCTCACACCTCAGACTGT 485
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 366 ACAGGCTGTCTTTTTGGAGTTGTGTTCAAGTCGATTGTCTATTCTCACACCTCAGACTGT 425
Query 486 GAAGG 490
|||||
Sbjct 426 GAAGG 430
> AT1G05270.1 | Symbols: | TraB family protein | chr1:1531641-1534410
REVERSE LENGTH=1386
Length=1386
Score = 359 bits (194), Expect = 3e-98
Identities = 367/450 (82%), Gaps = 14/450 (3%)
Strand=Plus/Plus
Query 502 CTTGAAGTTTTTCCTGGTGCTGAATTTCGTGTGGCATTTGAAGAGGCAAACAAATATGGT 561
||||| ||||||||||||||||| ||||||||||| | ||||||||| | ||||||||
Sbjct 673 CTTGAGGTTTTTCCTGGTGCTGAGTTTCGTGTGGCGTATGAAGAGGCGATTAAATATGGC 732
Query 562 GGCGCA-GTGTTTCCTGGCGATCGTCCAGTACAGATCACGCTACAGAGAACATGGGGTAA 620
||| | ||| | | ||| |||||||| |||||||| ||| || |||||||||||| ||
Sbjct 733 GGC-AAGGTGATACTTGGTGATCGTCCTGTACAGATTACGTTAAAGAGAACATGGGCCAA 791
Query 621 AATGCCTCTATGGCACAAAATAAAACTAGTGTACAGCATAGTGTCTCAAGCTGTCTTTC- 679
||||||||||||||||| | || | | ||| |||| ||| |||||||||| |||
Sbjct 792 GATGCCTCTATGGCACAAGGTTAAGTTTTTATACTCCATACTGTTTCAAGCTGTC-TTCT 850
Query 680 TGCCGAAAC-CCGAGGAACTTGAGAAGATGCTGAAAGACAT-GAGCGATGCT-GATATGC 736
||||| | | |||||||| ||||| ||||||||||| || || | ||| | ||||||
Sbjct 851 TGCCG-GGCGCTGAGGAACTCGAGAAAATGCTGAAAGATATGGA-CAATG-TGGATATGG 907
Query 737 TGACATTGGTGATTCAAGAAATGAGCAAGGAATTTCCGTCTCTCATGGAGACACTTGTGC 796
|||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct 908 TGACTTTGGTGATTCAAGAAATGAGCAAGGAATTTCCAACTCTCATGGATACAATTGTGC 967
Query 797 ATGAGCGAGATAAGTACATGGCATATTATTTGTTGAGACTTGCAAGTGAGCATAGTTCAG 856
|||||||||| |||||||||||| | |||| ||||| |||||||||| |||||||| |
Sbjct 968 ATGAGCGAGACCAGTACATGGCATCCTCTTTGCTGAGAGTTGCAAGTGACCATAGTTCGG 1027
Query 857 TCGTGGCAGTTGTCGGTAGAGGGCATCTTCAAGGGA-TCAAGAAGAATTGGAACCAACCT 915
| || |||||| |||| | ||| ||| || || ||| |||||||||||||||| ||||||
Sbjct 1028 TTGTAGCAGTTATCGGAAAAGGACATATT-AATGGAATCAAGAAGAATTGGAAGCAACCT 1086
Query 916 ATAAAC-ATAAAGGAACTATTGGAGTTACC 944
|| | | || || || ||| ||||| ||||
Sbjct 1087 ATTA-CGATGAATGATCTAATGGAGATACC 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5