BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg344996

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32380.1 | Symbols:  | Transmembrane protein 97, predicted |...   760    0.0  


> AT2G32380.1 | Symbols:  | Transmembrane protein 97, predicted 
| chr2:13746611-13747791 REVERSE LENGTH=749
Length=749

 Score =  760 bits (411),  Expect = 0.0
 Identities = 475/507 (94%), Gaps = 0/507 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGCATTTTGCAAGTTGATCGATGCAGTTCTCTTCTTATACTTTGCTCTAATGGCG  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  62   ATGGGAGCATTTTGCAAGTTGATCGATGCGGTTCTCTTCTTATACTTTGCTCTCATGGCG  121

Query  61   ATCGTTGCGCCGCTCATCGACAGTCAAATAAGTCTTCCCGGAGATATCTTCCCGGCGTTT  120
             |  |||||||||| |||||| ||||||  ||||||||||| ||||||||||||||||||
Sbjct  122  GTAATTGCGCCGCTTATCGACGGTCAAACGAGTCTTCCCGGCGATATCTTCCCGGCGTTT  181

Query  121  CTCGTCGATCTGAATCGTTGGTACATCGATGAATTTGGAGATTATCTAGCCAAGGAGAAG  180
             |||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||
Sbjct  182  ATCGTCGATCTGAATCGCTGGTACATTGATGAATTTGGAGATTATCTAGTCAAAGAGAAG  241

Query  181  CCGCATTTCCTCGTAGGACTCATCTGGCACGAGCTTCTGCTTCTTTGGCCGCTCTCGATC  240
            ||||||||||| || |||||| ||||||| |||||| ||||||||||||||||||| |||
Sbjct  242  CCGCATTTCCTAGTCGGACTCGTCTGGCATGAGCTTTTGCTTCTTTGGCCGCTCTCAATC  301

Query  241  GTCAACGTCTACGCAATTCTCGCCGGGAAATCTTGGTTTGGTACCACCTCAATGGTGTAC  300
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  302  GTCAACGTCTACGCAATTCTCGCTGGGAAATCGTGGTTTGGTACCACCTCAATGGTGTAC  361

Query  301  GGAGCTTCCGTCGTGACTTCTATGGCTGCTATACTGGGAGAGATGGTAGGTTCAGGGAAG  360
            ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct  362  GGAGCTTCCGTCGTGACTTCTATGGCTGCTATACTGGGAGAGATGATAGGATCAGGGAAG  421

Query  361  GCATCTGAGAAATTGTTGATGATGCATTTGCCATTCATGGGTGTTGGTATTCTAGCTCTT  420
            |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  422  GCATCTGAGAAATTGTTGATGATGTATGTGCCATTCATGGGTGTTGGTATTCTAGCTCTT  481

Query  421  CTTCGTGGTCTTCTTTCTCGATCCAGCAAAAGCAGTGGAGCTGATGGCAAGAGACCTGCT  480
            ||||||||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||
Sbjct  482  CTTCGTGGTCTTCTTTCTCAATCCAACAAAAGTGGTGGAGCTGTTGGCAAGAGACCTGCT  541

Query  481  ATTTTGGCCAGGAGAAAGCGTGCTTGA  507
            |||||||||||||||||||||||||||
Sbjct  542  ATTTTGGCCAGGAGAAAGCGTGCTTGA  568



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5