BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg344998 Length=606 Score E Sequences producing significant alignments: (Bits) Value AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 165 4e-40 > AT2G31470.1 | Symbols: DOR | F-box and associated interaction domains-containing protein | chr2:13407492-13408655 REVERSE LENGTH=1164 Length=1164 Score = 165 bits (89), Expect = 4e-40 Identities = 374/506 (74%), Gaps = 41/506 (8%) Strand=Plus/Plus Query 103 ATCCCAGTTGATCTCATTGTCGAGATATTATCTAGGTTGTCGGTGAAGTCTATAGCAAGA 162 |||||| |||||||| || |||||||||| || |||| | | |||||||||||||||||| Sbjct 73 ATCCCAATTGATCTCGTTATCGAGATATTCTCAAGGTCGCCTGTGAAGTCTATAGCAAGA 132 Query 163 TGTCGTTGCGTATCGAAGCTCTGGACCTCCGTACTTCGCCGT-CCAGATTTCACAGAGTT 221 |||||||||||||| ||||| ||| ||||| |||| |||| | || ||||||| ||||| Sbjct 133 TGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTCCGCC-TACCCTATTTCACGGAGTT 191 Query 222 GTTTTTGAC-AAGATCTT-TGGCTCGACCGCAGA-TATTGGTCGCCTACCAAACAA-ACG 277 || ||||| || ||||| || |||| ||| || | ||| |||||| ||||| || || Sbjct 192 GTACTTGACCAA-ATCTTGTG-CTCGCCCG-AGGCTCTTGTTCGCCTGCCAAA-AACACA 247 Query 278 GAGAATTCTTCTTCTCCTCCTGGCCTCAGCCTCG-AAGTC-TGGAAGTGA-A-CTCGTCT 333 |||| || ||||||| ||| |||||||||| || || | || ||| | ||||||| Sbjct 248 GAGAGTTGTTCTTCTTCTCGACACCTCAGCCTCATAA-TCCT--AA-TGAGAGCTCGTCT 303 Query 334 CCGGTAAG-TATCAATCATCTTAAGCGCCTCCCCTTTTCTGGTCCCTGTAAAATTCTTGG 392 || || | | || | || || | | |||||| ||||| || ||| ||| | | Sbjct 304 CCTTTA-GCTGCCAGTTTTCATATGAAAATTCCCTTTGATGGTCGCTTTAATATTATCAG 362 Query 393 TCTTGTCCAAGGC-TTGGTCTGTCTTATAGACAGA-CGGTTCTTAAACGGAAGGA---CG 447 || | || ||| ||| ||| | ||| | | || | | ||||||| ||||||| | Sbjct 363 TCCTATCGGTGGCCTTG-TCTTTGTTAGATAT-GAACAGATCTTAAAGGGAAGGAAAACT 420 Query 448 --AGAACG-GTGC-CAGTGATATGTAACCCTAGCACTGGAGAATCCTTATCTTTATCCAC 503 |||| || | | | |||||||||||||||||| ||| |||||||| | ||| ||| Sbjct 421 CCAGAATTTGT-CTCGGCGATATGTAACCCTAGCACGGGACAATCCTTAACCTTA-CCAA 478 Query 504 AA--TGAAGACGAGGA-GATGCAAC-GT--TATAAGCTTTTTTGGGTATGATCCGATTGA 557 || | ||||| |||| || | | | || |||| ||||||||||||||| ||||| Sbjct 479 AACCT-AAGACAAGGAAGAGG-ATTTGGGGTACAAGCCATTTTGGGTATGATCCTATTGA 536 Query 558 GAAACAGTACAAGATCTTGTCCATGA 583 |||||| | |||| | ||||| |||| Sbjct 537 GAAACAATTCAAGGTATTGTCAATGA 562 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29186039407 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5