BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344998
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 165 4e-40
> AT2G31470.1 | Symbols: DOR | F-box and associated interaction
domains-containing protein | chr2:13407492-13408655 REVERSE
LENGTH=1164
Length=1164
Score = 165 bits (89), Expect = 4e-40
Identities = 374/506 (74%), Gaps = 41/506 (8%)
Strand=Plus/Plus
Query 103 ATCCCAGTTGATCTCATTGTCGAGATATTATCTAGGTTGTCGGTGAAGTCTATAGCAAGA 162
|||||| |||||||| || |||||||||| || |||| | | ||||||||||||||||||
Sbjct 73 ATCCCAATTGATCTCGTTATCGAGATATTCTCAAGGTCGCCTGTGAAGTCTATAGCAAGA 132
Query 163 TGTCGTTGCGTATCGAAGCTCTGGACCTCCGTACTTCGCCGT-CCAGATTTCACAGAGTT 221
|||||||||||||| ||||| ||| ||||| |||| |||| | || ||||||| |||||
Sbjct 133 TGTCGTTGCGTATCAAAGCTTTGGGCCTCCATACTCCGCC-TACCCTATTTCACGGAGTT 191
Query 222 GTTTTTGAC-AAGATCTT-TGGCTCGACCGCAGA-TATTGGTCGCCTACCAAACAA-ACG 277
|| ||||| || ||||| || |||| ||| || | ||| |||||| ||||| || ||
Sbjct 192 GTACTTGACCAA-ATCTTGTG-CTCGCCCG-AGGCTCTTGTTCGCCTGCCAAA-AACACA 247
Query 278 GAGAATTCTTCTTCTCCTCCTGGCCTCAGCCTCG-AAGTC-TGGAAGTGA-A-CTCGTCT 333
|||| || ||||||| ||| |||||||||| || || | || ||| | |||||||
Sbjct 248 GAGAGTTGTTCTTCTTCTCGACACCTCAGCCTCATAA-TCCT--AA-TGAGAGCTCGTCT 303
Query 334 CCGGTAAG-TATCAATCATCTTAAGCGCCTCCCCTTTTCTGGTCCCTGTAAAATTCTTGG 392
|| || | | || | || || | | |||||| ||||| || ||| ||| | |
Sbjct 304 CCTTTA-GCTGCCAGTTTTCATATGAAAATTCCCTTTGATGGTCGCTTTAATATTATCAG 362
Query 393 TCTTGTCCAAGGC-TTGGTCTGTCTTATAGACAGA-CGGTTCTTAAACGGAAGGA---CG 447
|| | || ||| ||| ||| | ||| | | || | | ||||||| ||||||| |
Sbjct 363 TCCTATCGGTGGCCTTG-TCTTTGTTAGATAT-GAACAGATCTTAAAGGGAAGGAAAACT 420
Query 448 --AGAACG-GTGC-CAGTGATATGTAACCCTAGCACTGGAGAATCCTTATCTTTATCCAC 503
|||| || | | | |||||||||||||||||| ||| |||||||| | ||| |||
Sbjct 421 CCAGAATTTGT-CTCGGCGATATGTAACCCTAGCACGGGACAATCCTTAACCTTA-CCAA 478
Query 504 AA--TGAAGACGAGGA-GATGCAAC-GT--TATAAGCTTTTTTGGGTATGATCCGATTGA 557
|| | ||||| |||| || | | | || |||| ||||||||||||||| |||||
Sbjct 479 AACCT-AAGACAAGGAAGAGG-ATTTGGGGTACAAGCCATTTTGGGTATGATCCTATTGA 536
Query 558 GAAACAGTACAAGATCTTGTCCATGA 583
|||||| | |||| | ||||| ||||
Sbjct 537 GAAACAATTCAAGGTATTGTCAATGA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29186039407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5