BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344999
Length=2877
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32390.3 | Symbols: GLR3.5 | glutamate receptor 3.5 | chr2:... 2832 0.0
AT1G05200.1 | Symbols: ATGLR3.4, GLR3.4, GLUR3 | glutamate rece... 2165 0.0
> AT2G32390.3 | Symbols: GLR3.5 | glutamate receptor 3.5 | chr2:13748441-13751933
REVERSE LENGTH=2749
Length=2749
Score = 2832 bits (1533), Expect = 0.0
Identities = 1690/1767 (96%), Gaps = 6/1767 (0%)
Strand=Plus/Plus
Query 1 ATGGGATTTTTCGTGATGATTAGAGTTAGAGATGTTTCCATGGGACTTATGCTCCTATGT 60
|||||||||||| | ||| | || |||||||||||||||||||| ||||||||||||||
Sbjct 11 ATGGGATTTTTC--G-TGA-T-GA-TTAGAGATGTTTCCATGGGATTTATGCTCCTATGT 64
Query 61 GTTTTTGCTTTGTGGGTTTTGCCAATACAAGGAGCTGGTAGAGAAAGTTTCTCAAGAAAC 120
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 65 ATTTCTGCTTTGTGGGTTTTGCCAATACAAGGTGCTGGTAGAGAAAGTTTCTCAAGAAAC 124
Query 121 TCTTCTTCTTCTTCTCTGCCAAGCTCTGTAAACGTTGGAGCTCTGTTTACTTATGATTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TCTTCTTCTTCTTCTCTGCCAAGCTCTGTAAACGTTGGAGCTCTGTTTACTTATGATTCT 184
Query 181 TTCGTTGGAAGAGCGGCCAAACTTGCGTTTGTGGTGGCCATTGACGACGTTAATGCTGAT 240
||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 185 TTCATTGGAAGAGCGGCCAAACTTGCGTTTGTGGCGGCCATTGAAGACATTAATGCTGAC 244
Query 241 CAGAGTATTCTCAGGGGCACCAAGCTTAATATCGTCTTCCAGGACGCAAATTGCAGTGGA 300
|||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 245 CAGAGTATCCTCAGGGGCACCAAGCTTAATATTGTCTTCCAGGACACTAATTGCAGTGGA 304
Query 301 TTTGTAGGCACCATGGGAGCTTTGCAGCTAATGGAGAACAGGGTTGTTGCAGCCATTGGT 360
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 305 TTTGTTGGCACCATGGGAGCTTTGCAGCTAATGGAGAACAAGGTGGTTGCAGCCATTGGT 364
Query 361 CCACAATCTTCAGGAATTGGTCACATAATCTCCCATGTAGCTAATGAGCTTCATGTACCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CCACAATCTTCAGGAATTGGTCACATAATCTCCCATGTAGCTAATGAGCTTCATGTACCT 424
Query 421 CTCCTGTCATTTGCAGCAACGGACCCGACTCTTTCTTCGCTTCAGTACCCTTATTTCCTT 480
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 425 TTCTTGTCATTTGCAGCAACGGACCCGACTCTTTCTTCGCTTCAATACCCTTATTTCCTT 484
Query 481 CGTACCACACAGAACGACTACTTCCAGATGAATGCAATCGCGGATTTTGTATCCTATTTC 540
|||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 485 CGTACCACACAGAATGATTACTTCCAGATGAATGCAATCACGGATTTTGTATCCTATTTT 544
Query 541 CGATGGAGAGAAGTTGTTGCGATCTTTGTGGATGATGAGTATGGTAGGAACGGGATATCT 600
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 545 CGATGGAGAGAAGTTGTTGCGATCTTTGTGGATGATGAGTATGGTAGGAATGGAATATCT 604
Query 601 GTCTTAGGCGATATTTTAGCCAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTTACA 660
|| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 605 GTATTAGGTGATGCTTTAGCCAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTTCCA 664
Query 661 CCTGGTGCAGATAGTAGCTCAATCAGTGATTTATTGGCTTCTGTTAATCTGATGGAATCT 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CCTGGTGCAGATAATAGCTCAATCAGTGATTTATTGGCTTCTGTTAATCTGATGGAATCT 724
Query 721 CGCATCTTTGTTGTTCATGTGAATCCTGATTCGGGTTTAAACATATACTCTGTCGCCAAA 780
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 725 CGCATCTTTGTTGTTCATGTGAATCCTGATTCGGGTTTAAACATATTCTCTGTCGCCAAA 784
Query 781 TCTCTTGGAATGATGGGAAGTGGCTATGTCTGGATCACCACTGATTGGCTTCTTACAGCT 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 785 TCTCTTGGAATGATGGGAAGTGGCTATGTCTGGATCACTACTGATTGGCTTCTTACAGCT 844
Query 841 TTGGATTCCATGGAACCGTTGGATACCAAAGCTATGGATCTCTTGCAAGGAGTGGTTGCA 900
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 845 TTGGATTCCATGGAACCGTTGGATCCCAGAGCTTTGGATCTCTTGCAAGGAGTGGTTGCA 904
Query 901 TTTGGTCATTACACACCTGAGAGTGACAACAAAAAACGGTTTAAAGCAAGATGGAAAAAC 960
||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||||
Sbjct 905 TTTCGTCATTACACACCTGAGAGTGACAACAAGAGACAGTTTAAAGGAAGATGGAAAAAC 964
Query 961 CTTAGATCCAAGGAGAGTTTAAAAAGTGATGACGGCTTCAATTCTTACGCGCTGTATGCT 1020
||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 965 CTTAGATTCAAGGAGAGTCTAAAAAGTGATGATGGCTTCAATTCTTACGCGCTGTATGCT 1024
Query 1021 TACGATTCTGTTTGGTTGGTAGCTCATGCTCTCGATGTTTTCTTCAGCCAAGGCAATACA 1080
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1025 TACGATTCTGTTTGGTTGGTAGCTCGCGCTCTCGATGTTTTCTTCAGCCAAGGCAATACA 1084
Query 1081 GTGACTTTCTCTAATGATCCAAATCTGAGGAATACCAACGATAGCAACATTAAGCTATCA 1140
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1085 GTGACTTTCTCTAATGATCCAAGTCTGAGGAATACCAACGATAGCGGCATTAAGCTATCA 1144
Query 1141 AAACTTAACATTTTCAATGAAGGGGAGAGGTTCTTGCAGGTCATTCTTGAGATGAATTAT 1200
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AAACTTCACATTTTCAATGAAGGGGAGAGGTTCTTGCAGGTCATTCTTGAGATGAATTAT 1204
Query 1201 ACAGGTCTGACTGGACAAATCGAGTTTAATTCAGAGAAAAACCGGATTAATCCAGCCTAC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 ACAGGTCTGACTGGACAAATCGAGTTTAATTCAGAGAAAAACCGGATTAATCCAGCCTAC 1264
Query 1261 GACATTCTAAACATAAAAAGTACAGGTCCACAGAGAGTTGGGTACTGGTCGAATCATACA 1320
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1265 GACATTCTGAACATAAAAAGTACAGGTCCACTGAGAGTTGGATACTGGTCGAATCATACA 1324
Query 1321 GGTTTCTCAGTTGTGCCTCCGGAGACATTATACTCTAAGCCTTCAAACACATCTGCAAAA 1380
||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GGTTTCTCAGTCGCGCCTCCAGAGACATTATACTCTAAGCCTTCAAACACATCTGCAAAA 1384
Query 1381 AACCAACGTCTTAATGAGATCATATGGCCAGGGGAAGTAATAAAGCCACCTCGGGGTTGG 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GACCAACGTCTTAATGAGATCATATGGCCAGGGGAAGTAATAAAGCCACCTCGGGGTTGG 1444
Query 1441 GTTTTCCCTGACAATGGAAAGCCTCTGAAAATCGGGGTGCCTAACCGTGTGAGCTACAAA 1500
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1445 GTTTTCCCTGAAAATGGAAAGCCGCTGAAAATCGGGGTGCCTAACCGTGTAAGCTACAAA 1504
Query 1501 AACTATGCTTCTAAGGACAAGAACCCACTTGGTGTTAAAGGCTATTGCATTGACATCTTT 1560
|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 1505 AACTATGCTTCTAAGGACAAGAACCCGCTTGGTGTTAAAGGCTTTTGCATCGACATCTTT 1564
Query 1561 GAAGCTGCGGTTCAATTGCTTCCATATCCCGTTCCACGTACTTACATACTATACGGGGAC 1620
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1565 GAAGCTGCGATTCAATTGCTTCCATATCCCGTTCCACGTACTTATATACTATATGGGGAC 1624
Query 1621 GGGAAGAAAAATCCTTCATATGACAACCTCATAAGTGAAGTTGCTGAAAATAGTTTCGAT 1680
|||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 1625 GGGAAGAAAAATCCTTCATATGACAATCTCATAAGTGAAGTTGCTGCAAATATTTTCGAT 1684
Query 1681 GCAGCTGTTGGGGATGTTACCATTATTACAAACAGAACCAAGTTTGTAGATTTCACGCAG 1740
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1685 GTAGCTGTTGGGGATGTTACCATCATTACAAACAGAACCAAGTTTGTAGATTTCACGCAG 1744
Query 1741 CCATTTATAGAATCAGGGCTTGTGGTG 1767
|||||||||||||||||||||||||||
Sbjct 1745 CCATTTATAGAATCAGGGCTTGTGGTG 1771
Score = 1245 bits (674), Expect = 0.0
Identities = 747/783 (95%), Gaps = 2/783 (0%)
Strand=Plus/Plus
Query 2096 AGCTAACATCTCGGATAGAAGGAATGGACACTCTAATAGCAAGCAACGAACCCATTGGAG 2155
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1950 AGCTAACATCTCGGATAGAAGGAATGGACACTTTAATAGCAAGCAACGAACCCATTGGAG 2009
Query 2156 TCCAAGATGGTACCTTTGCGTGGAAATATCTGGTCAATGAACTTAACATAGCTCCATCAA 2215
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2010 TCCAAGATGGTACCTTTGCGTGGAAATTTCTGGTCAATGAACTTAACATAGCTCCATCAA 2069
Query 2216 GAATCATTCCACTGAAAGATGAAGAAGAATATCTCTCTGCTCTTCAACGTGGTCCCAGAG 2275
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 GAATCATTCCGCTTAAAGACGAAGAAGAATATCTCTCTGCTCTTCAACGTGGTCCCAGAG 2129
Query 2276 ACGGTGGTGTGGCAGCCATTGTCGACGAGCTTCCTTACATTAAAGCTCTCTTGTCAAACA 2335
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 GCGGTGGCGTGGCAGCCATTGTCGACGAGCTTCCTTACATTAAAGCTCTCTTGTCAAACA 2189
Query 2336 GCAACTGCAAGTTCCGTACAGTTGGACAGGAATTCACCCGGACAGGCTGGGGATTTGCGT 2395
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2190 GCAACTGCAAGTTTCGAACAGTTGGACAGGAATTCACTCGGACAGGCTGGGGATTTGCGT 2249
Query 2396 TCCAGAGAGACTCTCCTCTAGCTGTGGACATGTCGACTGCGATCCTGCAACTGGCTGAAG 2455
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2250 TCCAGAGAGACTCTCCTCTAGCTGTGGACATGTCGACAGCGATCCTGCAACTGGCTGAAG 2309
Query 2456 AAGGAAAACTCGAGAAAATCCGCAAGAAATGGCTTACCTATGACCACGAGTGCACAATGC 2515
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 2310 AAGGAAAACTCGAGAAAATCCGCAAGAAATGGCTTACCTACGACCACGAATGTACAATGC 2369
Query 2516 AGATTTCAGACACAGAAAACTATCAAATCTCGGTACAGAGTTTCTGGGGACTCTTCCTAA 2575
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2370 AGATTTCAGATACAGAAAACTATCAAATATCGGTACAGAGTTTCTGGGGACTCTTCCTAA 2429
Query 2576 TCTGTGGCATCGTTTGGTTCATTGCACTAACACTCTTCTGCTGGAAAGTTTTCTGGCAAT 2635
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2430 TATGTGGCGTCGTTTGGTTCATTGCACTCACACTCTTCTGCTGGAAAGTTTTCTGGCAAT 2489
Query 2636 ACCAACGGTTAAGACCAGAAGAAAGTGATGGGGTACGGGCGAGGAGCGAGGAGGCGGGTT 2695
|||||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||
Sbjct 2490 ACCAACGGTTAAGACCAGAAGAGAGTGATGAAGTACAGGCGAGGAGCGAGGAGGCTGGTT 2549
Query 2696 CTTCTAGAGGGAAAAGTTTGAGAACGGTGAGTTTCAAGGATTTGATCAAAGTTGTTGATA 2755
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2550 CTTCTAGAGGGAAAAGTTTGAGAGCAGTGAGTTTCAAGGATTTGATCAAAGTTGTTGATA 2609
Query 2756 AGAGAGAAGCAGAGATCAAGGAGATGCTTAAGGAGAAGAGCAGTAAGAAACTCAAAGCA- 2814
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2610 AGAGAGAAGCAGAGATTAAGGAGATGCTTAAGGAGAAGAGCAGTAAGAAACTCAAAG-AT 2668
Query 2815 GGCCAAAGGTGAGGTGAGAATTCGCAGTCAAAAGATCACGAAACTCCACGGTTAGATAGA 2874
|||||||| | || ||||||||||||||| ||||||||||||||||||| || ||||| |
Sbjct 2669 GGCCAAAGTTCAGCTGAGAATTCGCAGTCGAAAGATCACGAAACTCCACAGTGAGATATA 2728
Query 2875 TAA 2877
|||
Sbjct 2729 TAA 2731
Score = 183 bits (99), Expect = 6e-45
Identities = 114/121 (94%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 1862 TTGTTGGAGCCGTCATTTGGATTCTTGAACACCGCTTTAACGAAGAATTCCGCGGACCTC 1921
||| ||| |||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 1764 TTG-TGGTGCCGTCATCTGGATTCTTGAACATCGATTTAACGAAGAATTCCGCGGACCTC 1822
Query 1922 CTAGGCGTCAAATCATTACCGTCTTCTGGTTTAGCTTCTCTACAATGTTCTTCTCTCACA 1981
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1823 CTAGGCGTCAAATCATTACAGTCTTCTGGTTTAGCTTCTCAACAATGTTCTTCTCTCACA 1882
Query 1982 G 1982
|
Sbjct 1883 G 1883
> AT1G05200.1 | Symbols: ATGLR3.4, GLR3.4, GLUR3 | glutamate receptor
3.4 | chr1:1505317-1509152 FORWARD LENGTH=3257
Length=3257
Score = 2165 bits (1172), Expect = 0.0
Identities = 2246/2759 (81%), Gaps = 96/2759 (3%)
Strand=Plus/Plus
Query 138 GCCAAGCTCTGTAAACGTTGGAGCTCTGTTTACTTATGATTCTTTCGTTGGAAGAGCGGC 197
|||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 398 GCCAAGCTCTGTGAATGTTGGAGCTCTGTTTACTTATGATTCTTTTATCGGAAGAGCGGC 457
Query 198 CAAACTTGCGTTTGTGGTGGCCATTGACGACGTTAATGCTGATCAGAGTATTCTCAGGGG 257
|||| ||| || | || || || || ||||||||||| || ||| |||| | |||
Sbjct 458 TAAACCCGCGGTTAAAGCAGCTATGGATGATGTTAATGCTGACCAAAGTGTTCTTAAGGG 517
Query 258 CACCAAGCTTAATATCGTCTTCCAGGACGCAAATTGCAGTGGATTTGTAGGCACCATGGG 317
|| ||||||||||||| |||| || ||| ||||||||||||||||| | |||||||||||
Sbjct 518 CATCAAGCTTAATATCATCTTTCAAGACTCAAATTGCAGTGGATTTATCGGCACCATGGG 577
Query 318 AGCTTTGCAGCTAATGGAGAACAGGGTTGTTGCAGCCATTGGTCCACAATCTTCAGGAAT 377
|||||||||||| ||||| |||| || ||||||||||||||||||||||||||||| ||
Sbjct 578 AGCTTTGCAGCTGATGGAAAACAAAGTGGTTGCAGCCATTGGTCCACAATCTTCAGGGAT 637
Query 378 TGGTCACATAATCTCCCATGTAGCTAATGAGCTTCATGTACCTCTCCTGTCATTTGCAGC 437
|| |||||| |||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 638 TGCTCACATGATCTCCTATGTAGCTAATGAGCTTCATGTACCTCTCTTGTCATTTGGAGC 697
Query 438 AACGGACCCGACTCTTTCTTCGCTTCAGTACCCTTATTTCCTTCGTACCACACAGAACGA 497
|||||| |||||||| || || || || | ||||||||||| || ||||| ||||| ||
Sbjct 698 AACGGATCCGACTCTCTCCTCTCTGCAATTTCCTTATTTCCTCCGCACCACGCAGAATGA 757
Query 498 CTACTTCCAGATGAATGCAATCGCGGATTTTGTATCCTATTTCCG-ATGGAGAGAAGTTG 556
|||||||| ||| |||| ||||| |||||| |||| |||| ||| ||||||| ||||
Sbjct 758 TTACTTCCAAATGCATGCGATCGCAGATTTTCTATCATATT-CCGGATGGAGACAAGTCA 816
Query 557 TTGCGATCTTTGTGGATGATGAGTATGGTAGGAACGGGATATCTGTC-TTAGGCGATATT 615
||||||| || || |||||||||| ||| |||||||||||||||||| || |||||| |
Sbjct 817 TTGCGATATTCGTTGATGATGAGTGTGGCAGGAACGGGATATCTGTCCTT-GGCGATGTA 875
Query 616 TTAGCCAAGAAACG-TGCCAAGATCTCTTACAAGGCTGCATTTACACCTGGTGCAGATAG 674
|||||||||||||| | | | ||||||||||||||||||| |||| ||||||||||||
Sbjct 876 TTAGCCAAGAAACGCT-CGAGGATCTCTTACAAGGCTGCAATTACTCCTGGTGCAGATTC 934
Query 675 TAGCTCAATCAGTGATTTATTGGCTTCTGTTAATCTGATGGAATCTCGCATCTTTGTTGT 734
|||||| ||||| || || |||| |||||||||||||||||||||||| | ||||||||
Sbjct 935 TAGCTCCATCAGAGACTTGTTGGTTTCTGTTAATCTGATGGAATCTCGGGTTTTTGTTGT 994
Query 735 TCATGTGAATCCTGATTCGGGTTTAAACATATACTCTGTCGCCAAATCTCTTGGAATGAT 794
|||||||||||||| || ||||||||| | | ||||| || |||||||||||||||||
Sbjct 995 CCATGTGAATCCTGACTCTGGTTTAAACGTTTTTTCTGTGGCTAAATCTCTTGGAATGAT 1054
Query 795 GGGAAGTGGCTATGTCTGGATCACCACTGATTGGCTTCTTACAGCTTTGGATTCCATGGA 854
|| |||||| ||||| |||||| | || || ||||||| ||||||| |||||||||||||
Sbjct 1055 GGCAAGTGGTTATGTTTGGATCGCAACAGACTGGCTTCCTACAGCTATGGATTCCATGGA 1114
Query 855 AC-CGTTGGATACCA-A-AGCTATGGATCTCTTGCAAGGAGTGGTTGCATTTGGTCATTA 911
| ||| |||| | | | | | |||||||||||||||||||||||||| ||| | || ||
Sbjct 1115 GCACGT-GGATTC-AGACA-CGATGGATCTCTTGCAAGGAGTGGTTGCTTTTCGCCACTA 1171
Query 912 CACAC-CTGAGAGT-GACAACAAAAAACGGTTTAAAGCAAGATGGAAAAACCTTAGATCC 969
|||| | |||||| | ||||| || ||||| || |||||||| || |||||| ||
Sbjct 1172 CACAATC-GAGAGTAGTGT-CAAAAGACAGTTTATGGCGAGATGGAAGAATCTTAGA-CC 1228
Query 970 AAGGAGAGTTTAAAAAGTGATGACGGCTTCAATTCTTACGCGCTGTATGCTTACGATTCT 1029
|| | | | ||| | ||| || ||||| ||| |||||||||| ||||||
Sbjct 1229 AA--A---T-------G--ATG--G-CTTTAACTCTTATGCGATGTATGCTTATGATTCT 1271
Query 1030 GTTTGGTTGGTAGCTCATGCTCTCGATGTTTTCTTCAGCCAAGGCAATA-CAGTGACTTT 1088
|||||||| || |||| ||| ||||||||||||||||| || ||||| || | |||||
Sbjct 1272 GTTTGGTTAGTTGCTCGTGCCCTCGATGTTTTCTTCAGAGAAAACAATAACA-TAACTTT 1330
Query 1089 CTCTAATGATCCAAATCTG-AGGAATACCAACGATAGCAAC-ATTAAGCTATCAAAACTT 1146
||| || |||||||||||| | || || || | ||||| | ||| |||||||| |||
Sbjct 1331 CTCCAACGATCCAAATCTGCACAAA-ACAAATGGTAGCA-CTATTCAGCTATCAGCACT- 1387
Query 1147 AACA-TTTTCAATGAAGGGGAGAGGTTCT-TGCAGGTCATTCTTGAGATGAATTATACAG 1204
|| ||||||||||||| |||| ||| | || || ||||||||| ||||||| |||| |
Sbjct 1388 AAGTGTTTTCAATGAAGGAGAGAAGTT-TATGAAGATCATTCTTGGGATGAATCATACTG 1446
Query 1205 GTCTGACTGGACAAATCGAGTTTAATTCAGAGAAAAACCGGATTAATCCAGCCTACGACA 1264
|| |||| || | |||| ||||| ||||||| | ||||||| ||||||| || || || |
Sbjct 1447 GTGTGACGGGTCCAATCCAGTTTGATTCAGATAGAAACCGGGTTAATCCGGCTTATGA-A 1505
Query 1265 -TTCTAAACATAAAAAGTACAGGTCCACAG-AGAGTTGGGTACTGGTCGAATCATACAGG 1322
|||||||| || || |||||| ||||| | | ||| ||||||||||| |||||| | ||
Sbjct 1506 GTTCTAAACTTAGAAGGTACAGCTCCAC-GCACAGTCGGGTACTGGTCAAATCATTCGGG 1564
Query 1323 TTTCTCAGTTGTGCC-TCCGGAGACATTATACTCTAAGCCTTCAAACACATCTGCAAAAA 1381
| |||| || || || ||| ||||| || ||||||| |||| ||||||||||| || ||
Sbjct 1565 TCTCTCTGTGGT-CCATCCAGAGACCTTGTACTCTAGGCCTCCAAACACATCTACAGCAA 1623
Query 1382 ACCAACGTCTTAATGAGA-TCATATGGCCAGGGGAAGTAA-TAAAGCCACCTCGGGGTTG 1439
|||| |||||||| | || |||||| ||||| ||||||| ||| ||| ||||| |||||
Sbjct 1624 ACCAGCGTCTTAAAG-GAATCATATATCCAGGAGAAGTAACTAA-GCCTCCTCGTGGTTG 1681
Query 1440 GGT-TTTCCCTGACAATGGAAAGCCTCTGAAAATCGGGGTGCCTAACCGTGTGAGCTACA 1498
||| ||||| | | |||||||| || || | ||||||||||||||||||||||||||| |
Sbjct 1682 GGTGTTTCC-TAATAATGGAAAACCGCTCAGAATCGGGGTGCCTAACCGTGTGAGCTATA 1740
Query 1499 AAAACTATGCTTCTAAGGACAAGAACCCACTTGGTGTTAAAGGCTATTGCATTGACATCT 1558
| | || | ||||||||| || ||||| | ||| |||| |||||| |||||||| |||
Sbjct 1741 CAGATTACGTTTCTAAGGATAAAAACCCGCCTGGCGTTAGAGGCTACTGCATTGATGTCT 1800
Query 1559 TTGAAGCTGCGGTTCAATTGCTTCCATATCCCGTTCCACGTACTTACATACTATACGGGG 1618
||||||| || || |||||||||||||||| |||||||||||||| |||||||| || |
Sbjct 1801 TTGAAGCCGCTATTGAATTGCTTCCATATCCTGTTCCACGTACTTATATACTATATGGAG 1860
Query 1619 ACGGGAAGAAAAATCCTTCATATGACAACCTCAT-AAGTGAAGTTGCTGAAAATAGTTTC 1677
||||||||| ||||||||| ||||| |||||| | || |||||||| || ||| |||
Sbjct 1861 ACGGGAAGAGAAATCCTTCTTATGATAACCTCGTCAA-TGAAGTTGTTGCGGATAATTTT 1919
Query 1678 GATGCAGCTGTTGGGGATGTTACCATTATTACAAACAGAACCAAGTT-TGTAGATTTCAC 1736
|||| |||||| || ||| | || || | ||||||||||| ||| | ||||||||||||
Sbjct 1920 GATGTAGCTGTAGGAGATATCACAATCGTCACAAACAGAAC-AAGATATGTAGATTTCAC 1978
Query 1737 GCAGCCATTTATAGAATCAGGGCTTGTGGTGGTAGCTCCAGTGAAGGGGGCCAAGTCTAG 1796
|| || |||||||||||||||||||||||||| ||||| || |||| ||||||||||||
Sbjct 1979 ACAACCGTTTATAGAATCAGGGCTTGTGGTGGTGGCTCCGGTTAAGGAGGCCAAGTCTAG 2038
Query 1797 TCCTTGGTCCTTCTTGAAGCCATTCACTATAGAGATGTGGGCTGTGACCGGTGCCCTT-T 1855
||||||||| ||| |||| |||||||||||||||||||||||||| || || | | || |
Sbjct 2039 TCCTTGGTCATTCCTGAAACCATTCACTATAGAGATGTGGGCTGTCACTGGAGGC-TTCT 2097
Query 1856 TTCTCTTTGTTGGAGCCGTCATTTGGATTCTTGAACACCGCTTTAACGAAGAATTCCGCG 1915
|||||||||| |||||| | | |||||||| ||||||||||| ||| |||||||||| |
Sbjct 2098 TTCTCTTTGTGGGAGCCATGGTCTGGATTCTCGAACACCGCTTCAACCAAGAATTCCGTG 2157
Query 1916 GACCTCCTAGGCGTCAAATCATTACCGTCTTCTGGTTTAGCTTCTCTACAATGTTCTTCT 1975
| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||
Sbjct 2158 GCCCTCCTAGGCGTCAACTCATTACCATCTTCTGGTTTAGCTTCTCAACAATGTTCTTCT 2217
Query 1976 CTCACAGGGAGAACACGGTGAGCACATTGGGGAGGTTTGTGCT-ACTCGTATGGTTATTT 2034
|||| ||||||||||||||||| || |||||||||||||||| | || | ||||||||
Sbjct 2218 CTCATAGGGAGAACACGGTGAGTTCACTGGGGAGGTTTGTGCTGA-TCATTTGGTTATTC 2276
Query 2035 GTGGTTCTAATCATCAACTCAAGCTACACAGCCAGTCTCACTTCAATCCTCACCGTTCAA 2094
|||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| ||| |
Sbjct 2277 GTGGTTCTGATCATCAACTCGAGCTACACGGCCAGTCTCACTTCGATCCTAACCATTCGA 2336
Query 2095 CAGCTAACATCTCGGATAGAAGGAATGGACA-CTCTAATAGCAAGCAACGAACCCATTGG 2153
||||| ||||||||||| |||||||| || | || | || | ||||| ||||| |||||
Sbjct 2337 CAGCTGACATCTCGGATTGAAGGAATAGATAGCT-TGGTAACGAGCAATGAACCAATTGG 2395
Query 2154 AGTCCAAGATGGTACCTTTGCGT-GGAAATATCTGGTCAATGAACTTAACATAGCT-CCA 2211
||| ||||| ||||||||||| | |||| ||||| |||| || ||||||||| || ||
Sbjct 2396 AGTTCAAGACGGTACCTTTGC-TCGGAACTATCTAATCAACGAGCTTAACATA-CTACCT 2453
Query 2212 TCAAGAATCATTCCACTGAAAGATGAAGAAGAATATCTCTCTGCTCTTCAACGTGGTCCC 2271
||||| || |||| |||||||| |||||| | || || |||||||| ||||| ||||||
Sbjct 2454 TCAAGGATTGTTCCTCTGAAAGACGAAGAACAGTACCTTTCTGCTCTGCAACGCGGTCCC 2513
Query 2272 AGA-GAC-GGTGGTGTGGCAGCCATTGTCGACGAGCTTCCTTACATTAAAGCTCTCTTGT 2329
| | | | || ||||||||||||||||| || |||||||||||||| ||| ||| |||
Sbjct 2514 A-ACG-CTGGCGGTGTGGCAGCCATTGTAGATGAGCTTCCTTACATCGAAGTTCTTTTGA 2571
Query 2330 CAAACAGCAACTGCAAGTTCCGTACAGTTGGACAGGAATTCACCCGGACAGGCTGGGGAT 2389
|||| ||||||||||| ||||||||||| || || || ||||| || ||||||||||| |
Sbjct 2572 CAAATAGCAACTGCAAATTCCGTACAGTAGGGCAAGAGTTCACACGCACAGGCTGGGG-T 2630
Query 2390 TT-GCGTTCCAGAGAGACTCTCCTCTAGCTGTGGACATGTCGACTGCGATCCTGCAACTG 2448
|| || ||||||||||| || ||| ||||||| |||||||| || || ||| |||||||
Sbjct 2631 TTCGCATTCCAGAGAGATTCCCCTTTAGCTGTAGACATGTCAACGGCTATCTTGCAACTA 2690
Query 2449 GCTGAAGAAGGAAAACTCGAGAAAATCCGCAAGAAATGGCTTACCTATGACCACGAGTGC 2508
|||||||||| | ||||||||||||| | ||||||||||| ||| | || || |||
Sbjct 2691 TCTGAAGAAGGCGAGCTCGAGAAAATCCATAGGAAATGGCTTAACTACAAGCATGAATGC 2750
Query 2509 ACAATGCAGATTTCAGACACAGAAAACTATCAAATCTCGGTACAGAGTTTCTGGGGACTC 2568
| |||||||| ||| ||| || ||| ||| | || || |||||||||||||||||
Sbjct 2751 TCGATGCAGATCTCAAACAGTGAGGACTCTCAGCTTTCACTAAAGAGTTTCTGGGGACTC 2810
Query 2569 TTCCTAATCTGTGGCATCGTTTGGTTCATTGCACTAACACTCTTCTGCTGGAAAGTTTTC 2628
||||| |||||||||||| ||| ||||| ||||| || |||||| ||||| ||||||
Sbjct 2811 TTCCTTATCTGTGGCATCACTTGCTTCATGGCACTCACTGTCTTCTTCTGGAGGGTTTTC 2870
Query 2629 TGGCAATACCA-ACGGTTAAGACCAGAAGAAAGTG-ATGGGGTACGGGCGAGGAGCGAGG 2686
||||||||||| | |||| ||||||| | | | | | || | |||| ||| ||| |
Sbjct 2871 TGGCAATACCAGA-GGTTGCTACCAGAA-AGTGCGGACGAGGAAAGGGC-AGG--CGAAG 2925
Query 2687 AGGCGG-GTTCTTCTAGA---GGGAAAAGTTT--GAGAACGGTGAGTTTCAAGGATTTGA 2740
| | | | | ||| || |||| | ||| ||| || | ||||||||||| ||||
Sbjct 2926 TGTCTGAGC-CATCTCGATCAGGGAGAGGTTCACGAGCACCG--AGTTTCAAGGAATTGA 2982
Query 2741 TCAAAGTTGTTGATAAGAGAGAAGCAGAGATCAAGGAGATGCTTAAGGAGAAGAGCAGTA 2800
| |||||||| |||||||| |||||||||||||||||||| |||||| ||||||| || |
Sbjct 2983 TAAAAGTTGTGGATAAGAGGGAAGCAGAGATCAAGGAGATACTTAAGCAGAAGAGTAGCA 3042
Query 2801 AGAAACTCAAA-GCAGGCCAAAGGTG-AGGTGAGAATTCGCAGTCAAAAGATCACGAAA 2857
||||||||||| | | |||||| || || || || ||| || ||| || || |||||
Sbjct 3043 AGAAACTCAAAAGTAC-CCAAAG-TGCAGCTGGGACTTCACAATCACAACATGGCGAAA 3099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142975787550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5