BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345050
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32930.2 | Symbols: ZFN2 | zinc finger nuclease 2 | chr2:139... 1888 0.0
> AT2G32930.2 | Symbols: ZFN2 | zinc finger nuclease 2 | chr2:13965758-13968957
REVERSE LENGTH=1998
Length=1998
Score = 1888 bits (1022), Expect = 0.0
Identities = 1258/1365 (92%), Gaps = 43/1365 (3%)
Strand=Plus/Plus
Query 1 ATGTCAGAAACTCAGCAGCAGGTTCAGAACTCTACTGGGTCGATTCGATCTCCCGAGAAA 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 ATGTCGGAAACTCAGCAGCAGGTTCAGAACTCTACTGGGTCGATTCGATCTCCCGACAAA 598
Query 61 ATTCAAGATACCTTCAGGAGGATGAAAGTTAATGAAGACAATATGGAGCAATCTAGTCCA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTGAAGATACCTTCAGGAGGATGAAAGTTAATGAAGACAATATGGAGCAATCTAGTCCA 658
Query 121 TATCCTGATCGTCCCGGTGAGCGAGATTGTCAGTTCTTTCTGAGAACTGGGCAGTGTGGC 180
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 659 TATCCTGATCGTCCTGGTGAGCGAGATTGCCAGTTCTTTCTGAGAACTGGTCAGTGTGGC 718
Query 181 TATGGAAACACCTGTCGGTACAATCACCCTCTTACTCATCTTCCACAGGGTGTTATTTAT 240
||||||||| | ||||| |||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 719 TATGGAAACTCTTGTCGATACAATCATCCTCTTACTAATCTTCCACAGGGTATTATTTAT 778
Query 241 TACAAAGACCAATTGCCTGAGAGGA-TTGGACAGCCTGACTGTGAGTATTTTCTGAAGAC 299
|||| ||||||||||||||||| || |||||||||||||| | | || ||||
Sbjct 779 TACAGAGACCAATTGCCTGAGA-GAGTTGGACAGCCTGAC--T--G-------TG-AGAC 825
Query 300 AGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCC-AAAGGACAGGAATGGAG 358
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 826 AGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCCTAAA-GACAGGAATGGTG 884
Query 359 CTGGACCCGTGCTGTTCAATGTTCTCGGTTTTCCTATGCGACAGGGTGAGAAGTCATGCC 418
||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |
Sbjct 885 CTGGACCCGTGCTGTTCAATGTTCTCGGTTTGCCTATGCGGCAGGGTGAGAAGCCATGTC 944
Query 419 CGTATTACATGCAGACAGGATTGTGTCGATTCGGGGTTGCCTGCAAATTCCATCATCCTC 478
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 945 CATATTACATGCAGACAGGATTGTGTCGATTCGGAGTTGCCTGCAAATTCCATCATCCTC 1004
Query 479 A---TC---CTCAGCCTTCTAATGGCCACTCTGCATATGCAATGTCCAGCTTTCCGTCTG 532
| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ATCCTCATTCTCAGCCTTCTAATGGCCACTCTGCATATGCAATGTCCAGCTTTCCGTCTG 1064
Query 533 TTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGCCTTTGCCTCCTGCAACATATGGAG 592
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1065 TTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGTCTTTGCCTCCTGCAACATATGGAG 1124
Query 593 CTATGGCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTTCATGGTTGCACCTT 652
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1125 CTATTCCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTACATGGTTGCACCCT 1184
Query 653 CCCAAGGCCTTATGCCTCCTCAAGGCTGGGCCACTTACATGGCTGCATCTAACCCCATTT 712
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1185 CCCAAGGCCTTTTACCTCCTCAAGGCTGGGCCACTTACATGACTGCATCTAACCCCATTT 1244
Query 713 ACAGTGTGAAAGCTCAACTTGACTCCAGTTCTAGTGCATCGGTGCCTGTGGCCGTGACAT 772
||| | ||||| ||||||| |||||||||||||| ||||||||| ||||| |||||||||
Sbjct 1245 ACAATATGAAAACTCAACTCGACTCCAGTTCTAGCGCATCGGTGGCTGTGACCGTGACAT 1304
Query 773 CACATCATCACAGTTTTTCTGAAAGAGCTGAATGTAGGTTTTTTATGAACACCGGAACAT 832
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1305 CACATCATCACAGTTTTTCTGAAAGAGCTGAATGTAGGTTTTTTATGAACACTGGAACTT 1364
Query 833 GTAAATATGGAGATGATTGCAAATACATTCATCCGAAAGAAAGGTTGTTACAATCACCAC 892
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1365 GTAAATATGGTGATGATTGCAAATACAGTCATCCGAAAGAAAGATTGTTACAATCACCAC 1424
Query 893 CAAATCTCTTGAACCCTATTGTACTTCCCGCAAGACCAGGACAACCAGCATGTGGTAACT 952
||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1425 CAACTCTCTTGAACCCTATTGTTCTTCCAGCAAGACCAGGACAGCCAGCATGTGGTAACT 1484
Query 953 TTAAGGCCTACGGATTCTGCAAGTTTGGAGCAAGCTGCAAATTTGATCACTCAATGCCAC 1012
| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1485 TCAAGGCCTACGGATTTTGCAAGTTTGGAGCAAACTGCAAATTTGATCACTCAATGCTGC 1544
Query 1013 TAAACCCTTATAACAATACGGGCTTGGCCATGTCTTCTCTGCCTACTCCTAATCCTTATG 1072
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1545 TAAACCCTTATAACAATACGGGCTTGGCCATGTCTTCTCTGCCTACTCCTTATCCTTATG 1604
Query 1073 CTCCACCTGTTTCAACTAATCTGAGGATCTCATCGCCACCAAGCCGCC-CTGAT-TCGAC 1130
|||||||||||||||||||| |||||||||||||||||||||||| || ||||| | |||
Sbjct 1605 CTCCACCTGTTTCAACTAATTTGAGGATCTCATCGCCACCAAGCC-CCTCTGATAT-GAC 1662
Query 1131 TACCCTATCCAATGGTAAACCCGCTGCTGCAGA-GACTCAAAGCTTGGAGACTGAGAAAC 1189
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1663 TACCCTATCCAATGGTAAACCCGCTGCTGCAGAAG-CTCAAAGCTTGGAGACTGAGAAAC 1721
Query 1190 AAGACGATAGTCCTGCACAACCAGAAAAGTCAGAAGTGCAGGACTCATTGCCACCAAGCC 1249
||||||||||||| || |||||||||| ||||||||| |||||||||||||||||| |
Sbjct 1722 AAGACGATAGTCCAACAGAACCAGAAAAATCAGAAGTGGAGGACTCATTGCCACCAAACG 1781
Query 1250 GCTCTGATTCAACCTCCCTACCCAATGTTAAACCTGATTCTGAGAATCCGAGTTCAGAGA 1309
||||||||||||||||||| ||||||| |||||||||| | | || |||
Sbjct 1782 GCTCTGATTCAACCTCCCTGCCCAATGATAAACCTGAT---G-----C--AG---AGA-- 1826
Query 1310 CTGAGAAACAAGACGATAATACTGCACAACCGGACAGCTCAAAAG 1354
||||||||||||||||| || ||||| ||| ||||||||||||||
Sbjct 1827 CTGAGAAACAAGACGATGATTCTGCAGAACTGGACAGCTCAAAAG 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5