BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345055
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits t... 1371 0.0
> AT2G32980.1 | Symbols: | unknown protein; Has 158 Blast hits
to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa
- 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes
- 14 (source: NCBI BLink). | chr2:13997382-13999828 REVERSE
LENGTH=1191
Length=1191
Score = 1371 bits (742), Expect = 0.0
Identities = 846/893 (95%), Gaps = 19/893 (2%)
Strand=Plus/Plus
Query 1 ATGTCGATGGGAAGCGACACGACGTGGGTTGGGAAGAAACCGATCAGGCGCATCGGCGGA 60
|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 114 ATGTCGATGGGAGGCGACACGACGTGGGTTGGGAAGAAGCCGATCAGACGCATCGGTGGA 173
Query 61 TTGTCTGATGCTCTCTCTATCGCCTCCGATCTTGGTTTCGCCGTCGCTCCTCCTCCGTCG 120
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 TTATCTGATGCTCTCTCTATCGCCTCCGATCTCGGTTTCGCCGTCGCTCCTCCTCCGTCG 233
Query 121 CATGAAGAATTACAAAGCTTGGCGACTTCGAATGGCGAAAAAGGTGACGATTTGATTAGG 180
|| ||||||||||||||||| ||| |||||||||| |||| |||||| |||||||| |||
Sbjct 234 CAGGAAGAATTACAAAGCTTTGCGTCTTCGAATGGGGAAAGAGGTGATGATTTGATAAGG 293
Query 181 GTTTTGAGAGAGTTATCTGCTGTTCAAAGGAAAATTGCAGACTTGCAGGTCGAGCTTCAA 240
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GTATTGAGAGAGTTATCTGTTGTTCAAAGGAAAATTGCAGACTTGCAGGTCGAGCTTCAA 353
Query 241 GGGAGGAAGGATGATAAAAATGTGGCGCATTTGACTCATG-TGAGTGAAATGCAAAAGAA 299
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 354 GGGAGGAAGGATGATAAAAATGTGGCGCATTTGACTCATGTTG-GTGAAATGCAAAAGAA 412
Query 300 AATCGAGACTTTGTCAAGGATTACTCAGATATTGAAAGATGTTATACAAAACAAGGATCG 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 413 AATCGAGACTTTGTCAAGGATTACTCAAATATTGAAAGATGTTATACAAAACAAGGATCG 472
Query 360 CATCATTGCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAATA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CATCATTGCTCGTCTCCAACAACCTTATTCGCTAGATTGCATTCCAGTTGAAGCAGAATA 532
Query 420 TCAGAAACAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGTGCCTTAACAGC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 533 TCAGAAACAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGCGCCTTAACAGC 592
Query 480 ATCCGTGTCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCCGTGTCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTCCTTCAGTCTGGGGGGA 652
Query 540 AATGCTGCGTCCAATACCTGTGGCACTAGCGTCATGCACAAGATTCTTTGAGGCAATGTC 599
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 653 AATGCTGCGTCCAATACCTGTGGCACTAGCGTCATGCACGAGATTCTTTGAGGCCATGTC 712
Query 600 TGCGATGAGAGAATCATTCGCGACTCTTCAAGA-CATTCGAGTTGGCAACTCTGCAGTTT 658
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 713 TGCGATGAGAGAATCATTCGCGACTCTTCAAGAGC-TTCGAGTTGGTAACTCTGCAGTTT 771
Query 659 CTTTACCAACAACACCAGGAGGTAACGAAATGACACATAGGGACTCAGATTGTGTGACTC 718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 CTTTACCAACAACACCAGGAGGTAACGAAATGACACATAGAGACTCAGATTGTGTGACTC 831
Query 719 CACCTCAAGGGAGAATAGAGTCAAGCTTCGACGACTTAGCTGTTCATAACACAAGGAGAC 778
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 832 CACCTCAAGGGAGGATAGAGTCAAGCTTCGACGATTTAGCTGTTCATAAAACAAGGAGAC 891
Query 779 AAAACAATGATAAAAATgaagaagaagaagaaga---------------TGGTAATAACA 823
||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 892 AAAACAATGATCAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAATAACA 951
Query 824 ATTCGAACAGGAGACTATCTTGGCCTCCTTCTGTAAAAAAGAGTAGCGTTTAA 876
|| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ATGGGAACCGGAGACTATCTTGGCCTCCTTCTGTAAAAAAGAGTAGCGTTTAA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5