BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345096
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33460.1 | Symbols: RIC1 | ROP-interactive CRIB motif-contai... 1033 0.0
> AT2G33460.1 | Symbols: RIC1 | ROP-interactive CRIB motif-containing
protein 1 | chr2:14174590-14175838 REVERSE LENGTH=851
Length=851
Score = 1033 bits (559), Expect = 0.0
Identities = 638/676 (94%), Gaps = 5/676 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACGACAATGAAGGGTCTTCTTAAGGGCCTTCGTTACATTACTCAGATTTTTGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATGGCGACGACAATGAAGGGTCTTCTTAAGGGCCTTCGTTACATTACTCAGATTTTTGAT 236
Query 61 GAAGAGAAAGAGCAGGAGATGCAGATAGGATTTCCGACCGATGTAAAGCATGTTGCCCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAAGAGAAAGAGCAGGAGATGCAGATAGGATTTCCGACCGATGTAAAGCATGTTGCCCAC 296
Query 121 ATTGGCTCCGACGGTCCAACCAACAACACGCCAAGCTGGATGAATGACTTTAAACCTCAA 180
||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 297 ATTGGCTCCGACGGTCCAACCAACACCACACCAAGCTGGATGAATGACTTTAAAACTCAA 356
Query 181 GAACATGAGAAAGGTCAAGTCGTTTCCAGGGGAAATTCAAACAAATACAACCCGCAAGGG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 GAACATGAGAAAGGTCAAGTCGTTTCCAGGGGAAATTCCAACAAATACAACCCGCAAGGG 416
Query 241 ATGAACCAACGTGGAGCCGGGCTAAAAGAGTTACTGCCTTCGAACACCAACGAGAAACCA 300
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 ACGAACCAACGTGGAGCCGGGCTAAAAGAGTTACTGCCTTCGAACACAAACGAGAAACCG 476
Query 301 AAACATAAAACAAGGCGGAAACCCGGGGGAGCAGCTTCTCCAAATC-TAAACGGGTCTCC 359
||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 477 AAACAGAAAACAAGGCGGAAACCCGGAGGAGCAGCTTCTCCAAATCATAA-CGGGTCTCC 535
Query 360 GCCTAGAAGAAGTAGCGGAAGTGCTGCATCATCAGATGAACCATCAAAGCATTCAAGACA 419
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 536 GCCTAGAAAAAGTAGCGGAAATGCTGCATCATCAGATGAACCATCAAAGCATTCAAGACA 595
Query 420 TAACCGAAGCGCACACGGGTCAATGGACTCATCGAATGATCAAGAACCTTCAGTTCGTAG 479
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 596 TAACCGAAGCGCACACGGGTCAACAGACTCATCGAATGATCAAGAACCATCAGTTCGCAG 655
Query 480 GAGGCATTGTGGTATCCCGGCTCCTGACACGGAAGTTTCTAATCATCTTGCTGATGGTTC 539
|||| | |||||||||||||||| ||||| |||||| ||||||| | ||||||||||
Sbjct 656 AAGGCGTGGTGGTATCCCGGCTCCAGACACAGAAGTTCCTAATCAAATACCTGATGGTTC 715
Query 540 AGCTCCTCCACGGAAGGCTACATCGCGTCCAAGGAAACTAAAAGGATCATCAGCAGGAGG 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 AGCTCCTCCACGGAAGGCTACATCGCGTCCTAGGAAACTAAAAGGATCATCAGCAGGAGG 775
Query 600 AGAAGGTTCGGTTAAAAAATCAGCGAAAGGAAAACCCGAGAATTCAGTTGATACT---TG 656
|||||||||| |||| || || | ||||||||||||||||||||||||||||| ||
Sbjct 776 AGAAGGTTCGATTAAGAAGTCTTCAAAAGGAAAACCCGAGAATTCAGTTGATACAACCTG 835
Query 657 TAACGATATTATCTGA 672
||||||||||||||||
Sbjct 836 TAACGATATTATCTGA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5