BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345212
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34770.1 | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 ... 1197 0.0
> AT2G34770.1 | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase
1 | chr2:14665667-14668250 FORWARD LENGTH=1142
Length=1142
Score = 1197 bits (648), Expect = 0.0
Identities = 692/714 (97%), Gaps = 0/714 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGCTCAGGGATTCACTGTGGATCTTAAAAAGCCCCTTGTATTTCAGGTTGGTCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGGTTGCTCAGGGATTCACTGTGGATCTTAAAAAGCCCCTTGTATTTCAGGTTGGTCAT 299
Query 61 CTTGGAGAAGATTATGAGGAATGGGTTCACCAACCTATCGCAACCAAGGAAGGCCCTCGt 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CTTGGAGAAGATTATGAGGAATGGGTTCACCAACCTATCGCGACCAAGGAAGGCCCTCGG 359
Query 121 ttttttCAGAGTGACTTTTGGGAGTTCTTGACACTTACAGTTTGGTGGGCAGTTCCTGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTTTTCAGAGTGACTTTTGGGAGTTCTTGACACTTACAGTTTGGTGGGCAGTTCCTGTC 419
Query 181 ATTTGGTTGCCAGTTGTAGTCTGGTGCATATCAATGTCAATAAGTATGGGCTGCTCACTT 240
|||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||
Sbjct 420 ATTTGGTTGCCAGTTGTAGTCTGGTGCATATCAAGGTCAGTAAGTATGGGATGTTCACTT 479
Query 241 CCAGAAATCGTCCCAATTGTTTTCATGGGAATATTTATCTGGACATTTTTTGAATACGTT 300
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 480 CCAGAAATCGTCCCAATTGTTGTCATGGGAATATTCATCTGGACATTTTTTGAATACGTT 539
Query 301 CTTCACCGGTTTGTTTTCCACATAAAAACGAAGAGTTACTGGGGAAATACTGCACACTAT 360
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 CTTCACCGGTTCGTTTTCCACATAAAAACGAAGAGTTACTGGGGAAACACTGCACACTAT 599
Query 361 CTTATTCACGGATGCCATCATAAGCACCCAATGGACCACCTTCGACTCGTCTTTCCTCCT 420
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 600 CTTATTCACGGATGCCATCATAAGCACCCGATGGACCACCTTCGGCTCGTCTTTCCTCCT 659
Query 421 ACTGCAACAGCGATTTTATGCTTTCCGTTTTGGAACATCGCGAAGGCTATCTCAACTCCT 480
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 660 ACTGCAACAGCGATTTTATGCTTTCCGTTCTGGAACATTGCGAAGGCTATCTCAACTCCT 719
Query 481 TCAACTGCACCTGCATTGTTTGGTGGAGGCATGCTCGGGTATGTGATGTACGATGTCACT 540
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 TCAACCGCACCTGCATTGTTTGGTGGAGGCATGCTCGGATATGTGATGTACGATGTCACT 779
Query 541 CACTATTACCTTCACCATGCCCAACCTACTAGATCAGTGACAAAAAATCTCAAGAAGTAC 600
|| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 780 CATTATTACCTTCACCATGCCCAACCTACTAGACCAGTGACCAAAAATCTCAAGAAGTAC 839
Query 601 CATTTGAATCATCACTTCAGGATTCAGGACAAAGGATTTGGTATAACTTCGTCGTTATGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATTTGAATCATCACTTCAGGATTCAGGACAAAGGATTTGGTATAACTTCGTCGTTATGG 899
Query 661 GACATAGTATTTGGGACACTTCCCACTACAAAAGCCCCCAGAAAAGCGCAATAG 714
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 900 GACATAGTCTTTGGGACACTTCCCACCACAAAAGCCCCCAGAAAAGAGCAATAG 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5