BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345260
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35250.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1402 0.0
> AT2G35250.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:14846662-14848662 REVERSE LENGTH=1029
Length=1029
Score = 1402 bits (759), Expect = 0.0
Identities = 944/1034 (91%), Gaps = 10/1034 (1%)
Strand=Plus/Plus
Query 1 ATGGCATTACATCTAGCGTTAGGTCTATGTGTTTATCTGCTGTTTATACAAGGTTCACTG 60
|||||||||| |||||| ||| |||||||||||||||||||||||| ||||||| ||| |
Sbjct 1 ATGGCATTACGTCTAGCTTTAAGTCTATGTGTTTATCTGCTGTTTACACAAGGTGCACAG 60
Query 61 GGAAACATTGATGATTTTGATTGTGTTGAAATATACAAACAACCGGCTTTTCAACATCCA 120
||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 61 GGAAACACTGATGATTTTGATTGTGTGGAAATATACAAACAACCAGCTTTCCAACATCCA 120
Query 121 TTGTTGAAAGATCACAAGATACAGGAAACATTCAGCCTGGATGGAATTATTGAAAGAAGC 180
|||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 121 TTGTTGAAAGATCACAAGATCCAGGAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGC 180
Query 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTAAGACAAAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGA 240
Query 241 AATGAATCCAAGAGCGTTCATTTGAATACAGCCGAATATTCTGGTCAACATTTCGCAACA 300
|||| ||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 241 AATGTATCCAAGGGCGTTCATTTGAATACCGCCGAGTATTCTGGTCAACATTTTGCAACA 300
Query 301 ATTGAGACCATGTTAGATGGAAGTATATATTGGGGAGCAGAAGCTGATATAAGTATTCAT 360
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 ATTGAGACCATTTTAGATGGAAGTATATATCGGGGAGCAGAAGCTGATATAAGTATTCAT 360
Query 361 GATTTAAAATTGCAAAATAATCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGACCT 420
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATTTGAAACTGCAAAATAACCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGACCT 420
Query 421 CCAGATCAACTCAATAGTATACAAGCTGGTTGGGCAGTCCATCCAAGATTGTACGGTGAT 480
|||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 421 CCAGGTCAACTCAATAGTATACAAGCTGGTTTGGCAGTACATCCAAGATTGTACGGTGAT 480
Query 481 AGTGTCACACGATTTACAATATATTGGACTGGAGATGGTTATCAGAAAACTGGTTGCTAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 AGTGTCACACGATTTACAATATATTGGACTGGAGATGGTTATCAGAAAACTGGGTGCTAT 540
Query 541 AATACGCAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATCCAAGACTTGGAAG-GGAATT 599
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||
Sbjct 541 AATACACAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATTCAAGAATTGGAAGCGGA-TT 599
Query 600 TTGGGGAACATCTGTCTACGGTCAATTAAGCCTTACGTTTAAATTACAAGTTTTTCAAGA 659
|||||||||||||||||| ||| || ||| |||||||||||||| ||||||||||| ||
Sbjct 600 TTGGGGAACATCTGTCTATGGTAAAACAAGTCTTACGTTTAAATTGCAAGTTTTTCAGGA 659
Query 660 TGGTTTCAGCGGAAATTGGGGACTTAAAATGTTTAATGAAGTCATTGGTTATTGGCCCAA 719
||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 660 TGGCTTCAGCGGAAATTGGGCACTTAAAATGTTTGATGAAGTCATTGGTTATTGGCCTAA 719
Query 720 AGAGTTATTTCCACACTTAAATAATGGAGCTTCTCTAGTGAGATATGGAGGAAACACTTA 779
|||||||||| |||| || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 720 AGAGTTATTTTCACATTTGAATAATGGAGCTTCTCTAGTAAGATATGGAGGAAATACTT- 778
Query 780 TTTA-TCTCCCGACGGATTGAGTCCCCCTATGGGTAATGGATATTATCCAGTTGCAGACT 838
|| | |||||||| ||| | ||||| || ||||| ||||| | || ||||||||| ||||
Sbjct 779 TTGAATCTCCCGATGGAATCAGTCCTCCAATGGGCAATGGGTTTTTTCCAGTTGCGGACT 838
Query 839 TCAAAAAGACAGCACATTTTAATAATGTCGT-GATTATAAACTCACAATACAAAAGAGTT 897
| |||||||| |||||||||||||| ||||| | |||||||||| | || |||||||||
Sbjct 839 TTAAAAAGACGGCACATTTTAATAACGTCGTTG-TTATAAACTCGGACTATAAAAGAGTT 897
Query 898 TATGTTGAAGATAGGAAAATAAGACGTTATG-CTGATTCCTATAGAT-GTTTTAGGGTGA 955
|| |||||| |||||||||| ||| ||||| | |||||||||| || ||||||||| ||
Sbjct 898 TACATTGAAGGTAGGAAAATACGACTTTATGTC-GATTCCTATA-ATTGTTTTAGGGCGA 955
Query 956 CATATTGGGGTTATACCAAATCCACCGGAGTAGCTTTTTCGTTTGGAGGACCAGGAGGAA 1015
|||||||||||||||||||||| || |||| ||| ||||| |||||||||||||| ||||
Sbjct 956 CATATTGGGGTTATACCAAATCTACAGGAGAAGCCTTTTCATTTGGAGGACCAGGTGGAA 1015
Query 1016 ATTGTGGTGTTTGA 1029
|||||||| |||||
Sbjct 1016 ATTGTGGTTTTTGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5