BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345299
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35640.1 | Symbols: | Homeodomain-like superfamily protein ... 1391 0.0
AT2G35637.1 | Symbols: | other RNA | chr2:14982608-14983998 RE... 950 0.0
> AT2G35640.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:14982835-14984182 FORWARD LENGTH=1023
Length=1023
Score = 1391 bits (753), Expect = 0.0
Identities = 935/1020 (92%), Gaps = 23/1020 (2%)
Strand=Plus/Plus
Query 4 GCTGATCCATCGAGTGGTGAACATATGGTTATGAGAGAGTATAGAAAAGGGAATTGGACA 63
||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 10 GCTGATCCATCGAGTGGTGAACAGATAGTTATGAGAGAGTGCAGAAAAGGGAATTGGACA 69
Query 64 GTGAGTGAGACTTTGGTTCTCATAGAAGCCAAGAAGATGGACGACGAGAGACGTGTGCGG 123
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 70 GTGAGTGAGACTTTGGTTCTCATAGAAGCCAAGAAGATGGACGACCAGAGGCGTGTACGG 129
Query 124 CGATCAGAGAAACAACCGGAAGGCAGAAATAAACCAGCAGAGCTCCGGTGGAAGTGGATA 183
||||| || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 130 CGATCGGAAAAACAACCTGAAGGCAGAAACAAACCAGCAGAGCTCCGGTGGAAATGGATA 189
Query 184 GAGGAGTATTGTTGGAGAAGAGGATGTCAGAGGAACCAGAATCAGTGCAACGATAAGTGG 243
||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 190 GAGGAGTATTGCTGGAGAAGAGGATGTTACCGCAACCAGAATCAGTGCAACGATAAGTGG 249
Query 244 GACAATCTCATGAGGGATTACAAGAAGATCAGAGAGTACGAGAGATTGAGGGTAGAATCG 303
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 250 GACAATCTCATGAGGGATTACAAGAAGATCAGAGAGTACGAGAGATCAAGGGTAGAATCG 309
Query 304 TCTTTTAACACCAG-CTCTTCTTCCTCTTACTGGAAAATGGACAAGAGTGAGAGGAAAGA 362
|||||||||||| | | ||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 310 TCTTTTAACACC-GTCACTTCTTCCTCTTACTGGAAGATGGACAAGACTGAGAGGAAAGA 368
Query 363 GAAGAACTTGCCAAGTAACATGTTGTCTCAGATATACGACGCT-TTGGCTGAGCTTGTTG 421
|||||||||||| |||||||||||| ||||||||||||||| | ||| ||||||||||||
Sbjct 369 GAAGAACTTGCCGAGTAACATGTTGCCTCAGATATACGACG-TGTTGTCTGAGCTTGTTG 427
Query 422 GA-AGAAAGACTCTTCCTTCCTCCTCCTCCGCCGCCG------TAGGAAACGGTAACGGC 474
| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 428 -ACAGAAAAACTCTTCCTTCCTCCTCCTCCGCCGCCGCCGCCGTAGGAAACGGTAACGGT 486
Query 475 AGCCAGATCCTAAGAGTGTGCCAACAAAGTTTAGGATTTGTAGCTCCGATGATGGCTCAG 534
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GGCCAGATCCTAAGAGTTTGCCAACAAAGTTTAGGATTTGTAGCTCCGATGATGGCTCAG 546
Query 535 CCGATGCATCAAATCCCGACTACTATTGTATTATCT-TATCCGCCACCGCCGCCACAATC 593
|||||||||||||||||||||||||| || |||||| | ||||||||| |||||||| ||
Sbjct 547 CCGATGCATCAAATCCCGACTACTATAGTGTTATCTCT-TCCGCCACCACCGCCACAGTC 605
Query 594 TCT-ATGCTTATCACTTCCTTCGCCGCCTCAACCTCCACCGTCGTCCTCATTTCACGTTG 652
||| | |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 606 TCTTA-GCTTATCACTTCCTTCGCCGCCTCAACCTCCACCATCGTCTTCATTTCACGCTG 664
Query 653 AGCCTATACAGCCCACAGTAGACAGATCGCCGGGAAAGCGAAGGAAGA-CAACGCCGGGA 711
||||||||| ||||||||||| | ||| || ||||||||||| || |||||||||||
Sbjct 665 AGCCTATACCGCCCACAGTAGGTACATCATCGACAAAGCGAAGGA-GAACAACGCCGGGA 723
Query 712 GAAACCACCGCCGGAGGAGAGAGGGAGGCAGAGGAGGTTGCCATTGGGGCGGCGTTATCT 771
||||||||||| |||||||||||||||| |||||||| ||| |||||| |||||| |||
Sbjct 724 GAAACCACCGCTGGAGGAGAGAGGGAGGTAGAGGAGGATGCGGTTGGGGTGGCGTTGTCT 783
Query 772 AGATGCGCGTCTGTGATCACACAAGTGATaagagagagtgaggagagacaagagaggagg 831
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 784 AGATGCACGTCTGTGATCACACAAGTGATAAGAGAGAATGAGGAGGGACAAGAGAGGAGG 843
Query 832 cataaggaagtggtgaagctacaagagaggagaCTAAAGATTGAGGAATCAAAAGCTGAG 891
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 844 CATAAGGAAGTGGTGAGGCTACAAGAGAGGAGACTAAAGATTGAGGAATCAAAAACTGAA 903
Query 892 ATAAATAGACAAGGTAT-AAGTGGTTTGGTGGATGCCATTAATCAACTCGCAACCTCTAT 950
||||||||||||||||| || ||||||||| || ||||||||||||||||||| ||||||
Sbjct 904 ATAAATAGACAAGGTATGAA-TGGTTTGGTAGACGCCATTAATCAACTCGCAAGCTCTAT 962
Query 951 TCTTGCTTTGGCTTCTTCTTCTTCTTGTCATAATAATCACAATCATCAAGGAGGTCCACC 1010
||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 963 TCTTGCTTTGGCTTCTTCTTCTT---GCCATAATAATCGCAATCATCAAGGAGGTCCACC 1019
> AT2G35637.1 | Symbols: | other RNA | chr2:14982608-14983998
REVERSE LENGTH=1149
Length=1149
Score = 950 bits (514), Expect = 0.0
Identities = 628/681 (92%), Gaps = 16/681 (2%)
Strand=Plus/Minus
Query 4 GCTGATCCATCGAGTGGTGAACATATGGTTATGAGAGAGTATAGAAAAGGGAATTGGACA 63
||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 913 GCTGATCCATCGAGTGGTGAACAGATAGTTATGAGAGAGTGCAGAAAAGGGAATTGGACA 854
Query 64 GTGAGTGAGACTTTGGTTCTCATAGAAGCCAAGAAGATGGACGACGAGAGACGTGTGCGG 123
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 853 GTGAGTGAGACTTTGGTTCTCATAGAAGCCAAGAAGATGGACGACCAGAGGCGTGTACGG 794
Query 124 CGATCAGAGAAACAACCGGAAGGCAGAAATAAACCAGCAGAGCTCCGGTGGAAGTGGATA 183
||||| || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 793 CGATCGGAAAAACAACCTGAAGGCAGAAACAAACCAGCAGAGCTCCGGTGGAAATGGATA 734
Query 184 GAGGAGTATTGTTGGAGAAGAGGATGTCAGAGGAACCAGAATCAGTGCAACGATAAGTGG 243
||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 733 GAGGAGTATTGCTGGAGAAGAGGATGTTACCGCAACCAGAATCAGTGCAACGATAAGTGG 674
Query 244 GACAATCTCATGAGGGATTACAAGAAGATCAGAGAGTACGAGAGATTGAGGGTAGAATCG 303
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 673 GACAATCTCATGAGGGATTACAAGAAGATCAGAGAGTACGAGAGATCAAGGGTAGAATCG 614
Query 304 TCTTTTAACACCAG-CTCTTCTTCCTCTTACTGGAAAATGGACAAGAGTGAGAGGAAAGA 362
|||||||||||| | | ||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 613 TCTTTTAACACC-GTCACTTCTTCCTCTTACTGGAAGATGGACAAGACTGAGAGGAAAGA 555
Query 363 GAAGAACTTGCCAAGTAACATGTTGTCTCAGATATACGACGCT-TTGGCTGAGCTTGTTG 421
|||||||||||| |||||||||||| ||||||||||||||| | ||| ||||||||||||
Sbjct 554 GAAGAACTTGCCGAGTAACATGTTGCCTCAGATATACGACG-TGTTGTCTGAGCTTGTTG 496
Query 422 GA-AGAAAGACTCTTCCTTCCTCCTCCTCCGCCGCCG------TAGGAAACGGTAACGGC 474
| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 495 -ACAGAAAAACTCTTCCTTCCTCCTCCTCCGCCGCCGCCGCCGTAGGAAACGGTAACGGT 437
Query 475 AGCCAGATCCTAAGAGTGTGCCAACAAAGTTTAGGATTTGTAGCTCCGATGATGGCTCAG 534
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GGCCAGATCCTAAGAGTTTGCCAACAAAGTTTAGGATTTGTAGCTCCGATGATGGCTCAG 377
Query 535 CCGATGCATCAAATCCCGACTACTATTGTATTATCT-TATCCGCCACCGCCGCCACAATC 593
|||||||||||||||||||||||||| || |||||| | ||||||||| |||||||| ||
Sbjct 376 CCGATGCATCAAATCCCGACTACTATAGTGTTATCTCT-TCCGCCACCACCGCCACAGTC 318
Query 594 TCT-ATGCTTATCACTTCCTTCGCCGCCTCAACCTCCACCGTCGTCCTCATTTCACGTTG 652
||| | |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 317 TCTTA-GCTTATCACTTCCTTCGCCGCCTCAACCTCCACCATCGTCTTCATTTCACGCTG 259
Query 653 AGCCTATACAGCCCACAGTAG 673
||||||||| |||||||||||
Sbjct 258 AGCCTATACCGCCCACAGTAG 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5