BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345321
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35890.1 | Symbols: CPK25 | calcium-dependent protein kinase... 2344 0.0
> AT2G35890.1 | Symbols: CPK25 | calcium-dependent protein kinase
25 | chr2:15067175-15069136 REVERSE LENGTH=1563
Length=1563
Score = 2344 bits (1269), Expect = 0.0
Identities = 1484/1585 (94%), Gaps = 26/1585 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAATGTATGTGTTCATATGGTCAACAATTGTGTGGATACGAAATCAAATTCATGG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGGAATGTATGTGTTCATATGGTCAACAATTGTGTGGATACGAAATCGAATTCATGG 60
Query 61 GTTCGTCCCACAGATCTCATCATGGATCATCCCTTGAAGCCACAACTCCAAGACAAGCCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTCGTCCCACAGATCTCATCATGGATCATCCCTTGAAGCCACAACTCCAGGACAAGCCT 120
Query 121 CCTCGGCCAATGCTAATGTACAAGGATGATGATAAACCCAAGCTTAATGAAACTCATGGA 180
|||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct 121 CCTCAGCCAATGCTAATGAACAAGGATGATGATAAAACCAAGCTTAATGACACTCATGGT 180
Query 181 GACCCTAAATTACTTGAAGAGAAGGCA-AAACCTGCGCAGAAGCAAACGAGTTGGGAACA 239
||||||||||||||||| | ||| | | ||||||||||||||||||||||| | |
Sbjct 181 GACCCTAAATTACTTGAGGGGAAAG-AGAAACCTGCGCAGAAGCAAACGAG-T-----C- 232
Query 240 AGAAGGA-AGGGTGAGTGAAACAACAAAGAAGTGCAGTGAAGAAGAGAATAAGAAGCGTG 298
|| ||| | | ||| | || |||||||||||| |||||| |||||||||| |
Sbjct 233 AG--GGACA-AG-GAG-G-------AAGGAAGTGCAGTGACGAAGAGTATAAGAAGCGAG 280
Query 299 CGATTGCGTGTGGTAACAGCAAAAGAAAAGCTCACAACGTAAGGAGACTGATGAGTGCAG 358
|||||||||||| |||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct 281 CGATTGCGTGTGCTAACAGTAAAAGAAAGGCTCACAATGTGAGGAGACTGATGAGTGCAG 340
Query 359 GGCTTCAAGCAGAGTCAGTATTGAAGACCAAGACGGGGCATTTGAAAGAGTATTATAACT 418
|||| |||||||||||||| ||||||||||| || ||||||||||| || ||||||||||
Sbjct 341 GGCTACAAGCAGAGTCAGTGTTGAAGACCAAAACAGGGCATTTGAAGGAATATTATAACT 400
Query 419 TGGGAAGCAAGTTAGGTCATGGACAGTTTGGGACGACGTTCGTGTGTGTTGAGAAAGGAA 478
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 401 TGGGTAGCAAGTTAGGTCATGGACAGTTTGGGACTACGTTTGTGTGTGTTGAGAAAGGAA 460
Query 479 CAGGGGAGGAATACGCGTGCAAGTCTATACCGAAGAGGAAGCTAGAGAACGAAGAAGACG 538
||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 461 CAGGGGAGGAATATGCATGCAAGTCGATTCCGAAGAGGAAGCTAGAGAACGAAGAAGACG 520
Query 539 TGGAGGATGTAAGAAGAGAGATTGAGATAATGAAACATCTCTTGGGGCAACCAAATGTGA 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TGGAGGATGTGAGAAGAGAGATTGAGATAATGAAACATCTCTTGGGGCAACCAAATGTGA 580
Query 599 TCTCCATCAAAGGAGCTTATGAGGACTCAGTGGCTGTTCACATGGTGATGGAGCTGTGTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TCTCCATCAAAGGAGCTTATGAGGACTCAGTGGCTGTTCACATGGTGATGGAGCTGTGTA 640
Query 659 GAGGAGGTGAGCTGTTTGATAGAATAGTGGAGAGAGGGCATTACTCTGAGAGAAAAGCAG 718
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 641 GAGGAGGTGAGCTGTTTGATAGGATAGTGGAGAGAGGGCATTACTCTGAGAGAAAAGCTG 700
Query 719 CTCATTTGGCTAAGGTCATACTTGGTGTGGTCCAGACTTGTCATTCTTTAGGTGTGATGC 778
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 701 CTCATTTGGCTAAAGTCATACTTGGTGTGGTTCAGACTTGTCATTCTTTAGGTGTGATGC 760
Query 779 ATAGAGATCTTAAACCTGAGAACTTTCTCTTTGTCAACGATCACGAGGATTCGCCTCTTA 838
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 761 ACAGAGATCTTAAACCTGAGAACTTTCTCTTTGTCAACGATGACGAGGATTCGCCTCTTA 820
Query 839 AGGCTATTGATTTTGGGTTATCTATGTT-CGTCAAGCCTGGAGAAAACTTTACGGATGTG 897
||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 821 AGGCTATTGATTTCGGGTTATCTATGTTTC-TCAAGCCTGGAGAAAACTTTACGGATGTG 879
Query 898 GTTGGAAGTCCCTACTACATTGCGCCTGAAGTTCTCAACAAGAATTACGGTCCAGAAGCA 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 880 GTTGGAAGTCCCTACTACATTGCGCCTGAAGTTCTGAACAAGAATTACGGTCCAGAAGCA 939
Query 958 GATATTTGGAGCGCCGGTGTTG-TGATTTATGTGCTACTGTCTGGTTCAGCTCCATTTTG 1016
||||| |||||||| ||||| | ||||||| ||| ||||||||||||||||||| |||||
Sbjct 940 GATATATGGAGCGCAGGTGT-GATGATTTACGTGTTACTGTCTGGTTCAGCTCCGTTTTG 998
Query 1017 GGGAGAGACGGAAGAAGAAATCTTCAATGAGGTTCTGGACGGTGAGCTTGATTTGTCATC 1076
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 999 GGGAGAAACGGAAGAAGAAATCTTCAATGAGGTTCTGGAGGGTGAGCTTGATTTGACATC 1058
Query 1077 AGATCCTTGGCCACAAGTTTCTGAAAGCGCAAAAGATTTGATCAGAAAGATGCTCGAACG 1136
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1059 AGATCCTTGGCCACAAGTCTCTGAAAGCGCAAAAGATTTGATCAGAAAGATGCTTGAAAG 1118
Query 1137 AAATCCCAAACAAAGACTCACTGCTCAACAAGTCTTGTGCCATCCATGGATTAGGGATGA 1196
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1119 AAATCCCATACAAAGACTCACTGCTCAACAAGTATTATGCCATCCATGGATTAGGGATGA 1178
Query 1197 AGGAACTGCACCAGATACACCGCTTGACACGACTGTTTTGAGTCGCTTGAAGAAGTTTTC 1256
||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1179 AGGAAATGCACCAGATACACCACTTGACACAACTGTGTTGAGTCGCTTGAAGAAGTTTTC 1238
Query 1257 AGCTACAGACAAGCTCAAGAAGATGGCTTTAAGGGTGATTGCAGAAAGGCTTTCCGAACA 1316
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1239 AGCAACAGACAAGCTTAAGAAGATGGCTTTAAGGGTGATTGCAGAAAGGCTTTCCGAAGA 1298
Query 1317 AGAGATTCACGAGCTTAGAGAAACCTTCAAGATTATAGACAGTGAAAAGAGCGGGCGAGT 1376
||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1299 AGAGATTCACGAGCTCAGAGAAACATTCAAGACTATAGACAGTGGAAAGAGCGGGCGAGT 1358
Query 1377 AACTTATAAAGAACTCAAAAGTGGTCTTGAAAGATTTAACACAAATCTTGACGACTCTGA 1436
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1359 AACTTATAAAGAACTCAAAAACGGTCTTGAAAGATTTAACACAAATCTTGACAACTCTGA 1418
Query 1437 CATCAATAGTCTTATGCAAATGCCAACGGATGTGCACTTGGAAGACACAGTAGACTACGA 1496
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1419 CATCAATAGTCTTATGCAAATACCAACGGATGTGCACTTGGAAGACACAGTAGACTACAA 1478
Query 1497 GGAATTCATAGAGGCGATTGTAAGACTGAGACAAATACAAGAAGAGGAACCAAAGGATCG 1556
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1479 CGAATTCATAGAGGCGATTGTAAGACTGAGACAAATACAAGAAGAGGAAGCAAATGATCG 1538
Query 1557 TTTAGAATCATCAACAAAAGTGTAA 1581
|||||||||||||||||||||||||
Sbjct 1539 TTTAGAATCATCAACAAAAGTGTAA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5