BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345328
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35950.1 | Symbols: EDA12 | embryo sac development arrest 12... 893 0.0
> AT2G35950.1 | Symbols: EDA12 | embryo sac development arrest
12 | chr2:15104761-15106088 FORWARD LENGTH=967
Length=967
Score = 893 bits (483), Expect = 0.0
Identities = 577/622 (93%), Gaps = 8/622 (1%)
Strand=Plus/Plus
Query 11 GTTCTCGTTCTCGTTCTCATCTGTTCCTCAACGAGTTCGAAACGTCTGTCGGAGGATTCT 70
||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 117 GTT-TCGTTCTCGTTCTCATCTGTTCCTCAACGAGTTCGAAACGTCTGCCGGAAGATTCA 175
Query 71 ACTCT-CTCCGCCGTAACCACCGTGACCATCCGTACGTTTCCGACGCTGTGGACACACTC 129
||| | ||| |||||||||||||||| |||| |||||||||||||| |||||| ||||||
Sbjct 176 ACT-TGCTCAGCCGTAACCACCGTGATCATCTGTACGTTTCCGACGTTGTGGATACACTC 234
Query 130 TCTGATCAGTTCTCTTCCATGTCTCTTCTCCGTCCTAAACCCAGACCGATTCCTGCTTTA 189
||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||| ||||
Sbjct 235 TCTGAACAGTTCTCTTCGATGTCTCTTCTCCATCCTAAACCCAGACTGGTTCCTACTTTG 294
Query 190 TCTTCGAGTCTTCAGTCTTCTTTAAGGCTTAATGGTGTTAAAGCTGATCAGAGATTGTAC 249
|||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 295 CCTTCGAGTCTCCAGTCTTCTTTAAGGCCTAATGGTGTTAAAGCTTATCAGAGATTGTAC 354
Query 250 CGAGAAAGGCTCAAGCTTGAACCGTTTTATGAACTTCATCTTTCAAGGATCCGCAAAAAC 309
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 355 CGAGAAAGGCTCAAGCTTGAACCTTTTTATGAACTTCATCTTTCAAGGATCCGC--AAA- 411
Query 310 GAGTCACAACAAGACAGAGCTAAGGTTTTACAGAGACAAGAGGCACGGCTAAACAAGAGA 369
|||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 412 GAGTCACAGCAAGATAGAGCTAAGGTTTTACAGAGACAAGAGGCACGGCTACAGAAGAGA 471
Query 370 GGTTTGGCTCATCGAAACGGTAACGTTTTGAAGGAATCTGTAGGAACCGGCGTTTTCCAC 429
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 472 GGTTTGGTTCACCGAAACGGTAACGTTTTGAAGGAATCTGTAGGAACCGGCGTTTTTCAC 531
Query 430 CCTCTTCAGCGTCCAACTTTTAAGACTTGTGACTCTGTGAAGAAACATAATCAAAGGAAT 489
|||||||||||||||||||| ||||||| |||| |||||||||| |||||||||||||||
Sbjct 532 CCTCTTCAGCGTCCAACTTTCAAGACTTTTGACCCTGTGAAGAAGCATAATCAAAGGAAT 591
Query 490 CGGAATCAACGTGAGAAGGAGTTGT-TGACCAAAGAAAAAAGAGGAGTAATGACTACTAC 548
||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| ||||
Sbjct 592 CGGAATCAAAGTGAGAAGGAGTT-TATGACCAAAGAAAAAAGAGGAGTGATGACTTCTAC 650
Query 549 AACGCATGAGCAGCAACAGAAGGAAGAGTGTCATTATCATTTGCCTTCAGACATGGATTT 608
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 651 AACGCAGGAGCAGCAACAGAAAGAGGAGTGTCATTATCATTTGCCTTCAGACATGGATTT 710
Query 609 CTCCAAGGACTGGACTTTCTGA 630
||||||||||||||||||||||
Sbjct 711 CTCCAAGGACTGGACTTTCTGA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5