BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345344
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36130.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 673 0.0
> AT2G36130.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr2:15166773-15168497 FORWARD
LENGTH=823
Length=823
Score = 673 bits (364), Expect = 0.0
Identities = 456/496 (92%), Gaps = 23/496 (5%)
Strand=Plus/Plus
Query 1 ATGTCGGCGAGACCTGAAGGAAGTCCGCCGGAGGTTACGCTCGAGACCTCCATGGGTCCT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 ATGTCGGCAAGACCTGAAGGAAGTCCGCCGGAGGTTACGCTCGAGACCTCCATGGGTCCT 150
Query 61 TTCACCGTCGAGATGTATTATAAACACTCCCCGAGAACTTGCCGGAACTTCGTTGAACTA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 151 TTCACCGTCGAGATGTATTACAAACACTCCCCGAGAACTTGCCGGAACTTCCTTGAGCTA 210
Query 121 TCCC------G--A--A-G---A-G----G--TCACAGAATCGTCAAGGATTTCATTGTG 159
|||| | | | | | | | ||||||||||||||||||||||||||||
Sbjct 211 TCCCGGAGAGGTTACTATGACAACGTTCTGTTTCACAGAATCGTCAAGGATTTCATTGTG 270
Query 160 CAAGGTGGGGATCCTACAGGAACTGGAAGAGGTGGTGAATCCATTTATGGTTCGAAGTTT 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CAAGGTGGGGATCCTACAGGAACTGGAAGAGGTGGTGAATCCATTTATGGTTCGAAGTTT 330
Query 220 GAGGATGAGATAACCAAAGAGTTGAAGCACACAGGAGCTGGAATTTTATCAATGGCAAAC 279
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 331 GAGGATGAGATAAACAAAGAGTTGAAGCACACAGGAGCCGGAATTTTATCAATGGCGAAC 390
Query 280 GCTGGTCCTAATACAAATGGGAGTCAATTCTTT-ATTACTTTAGCGCCACAACCGTCCTT 338
||||||||||||||||||||||||||||| ||| || || ||||| ||||||||||||||
Sbjct 391 GCTGGTCCTAATACAAATGGGAGTCAATT-TTTCATCACCTTAGCCCCACAACCGTCCTT 449
Query 339 GGATGGAAAGCACACAATATTTGGCAGAGTGTGCCGTGGTATGGAGGTGATCAAGAGGCT 398
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 450 GGATGGAAAACACACAATATTTGGTAGAGTGTGCCGAGGCATGGAGGTGATCAAGAGGCT 509
Query 399 CGGTAGTGTCCAAACCGATAACACCGACAGGCCAATCCATGAAGTGAAGATTCTGAGGAC 458
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 510 CGGTAGTGTCCAAACCGATAACACCGACAGGCCGATCCATGAAGTGAAGATTCTAAGGAC 569
Query 459 TAAAGTGATCGATTGA 474
|||||||||||||||
Sbjct 570 CAAAGTGATCGATTGA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5