BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345419
Length=357
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36930.1 | Symbols: | zinc finger (C2H2 type) family protei... 555 1e-157
> AT2G36930.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr2:15509898-15511514 REVERSE LENGTH=787
Length=787
Score = 555 bits (300), Expect = 1e-157
Identities = 334/351 (95%), Gaps = 0/351 (0%)
Strand=Plus/Plus
Query 1 ATGGGTAGATGTCCGACTAGAAAAGTGAAGAAGAGGAGATTATCTCACAAAACAGCTCGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 ATGGGTAGATGTCCGACTAGAAAAGTGAAGAAGAGGAGATTATCTCACAAAACAGCTCGC 146
Query 61 CGTGACAAATTCGAAGTCAAAGGCGATGACTTGGTTTACACAGAGTTGCGTAAACCGGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CGTGACAAATTCGAAGTCAAAGGCGATGACTTGGTTTACACAGAGTTGCGTAAACCGGAG 206
Query 121 ACGGAGATTAAGCCTTTCCAGCTTGATGAGGATTTGCCTGGAATGGGTCAATTCTACTGC 180
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 207 ACGGAGATTAAGCCGTTACAGCTTGACGAGGATTTGCCTGGAATGGGTCAATTCTACTGC 266
Query 181 TTACACTGCGACCGATACTTCTCCAATGCATCAGTGCGGAATGATCATTTCAAGACTAAG 240
||||||||||| |||||||||||||| | ||||||| || ||||||||||||||||||||
Sbjct 267 TTACACTGCGATCGATACTTCTCCAACGTATCAGTGAGGGATGATCATTTCAAGACTAAG 326
Query 241 AAACACAAGAAGCGTGTGAAGATGATGAAAGGACCAGCGCCACACTCGCAACTCGATGCC 300
|||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct 327 AAACACAAGAAGCGTGTGAATATGATGATGGGACAAGCGCCACACTCGCAACTCGATGCA 386
Query 301 GATTTAGCCGGTGGAATGGGAATGCCGGACAATGGTCCAAAGCTGATGTCT 351
||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 387 GATTTAGCCGGGGGAATGGGGATGCCGGACAATGGCCCAAAGCTGATGTCT 437
Score = 283 bits (153), Expect = 7e-76
Identities = 194/213 (91%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 148 GAGGATTTGCCTGGAATGGGTCAATTCTACTGCTTACACTGCGA-CCGATACTTCTCCAA 206
|||||||| |||||||||||||||||| ||||||||| |||| | | || ||||||||||
Sbjct 474 GAGGATTTACCTGGAATGGGTCAATTCAACTGCTTACTCTGCCATCGGA-ACTTCTCCAA 532
Query 207 TGCATCAGTG-CGGAATGATCATTTCAAGACTAAGAAACACAAGAAGCGTGTGAAGATGA 265
|||||||||| || || ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 533 TGCATCAGTGATGG-ATTATCATTTCAAGACTAAGAAACACAAAAAGCGTGTGAAGAAGA 591
Query 266 TGAAAG-GACCAGCGCCACACTCGCAACTCGATGCCGATTTAGCCGGTGGAATGGGAATG 324
| | || |||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 592 T-AGAGCGACCAGCGCCACACTCGCAACTCGATGCAGATTTAGCTGGTGGAATGGGAATG 650
Query 325 CCGGACAATGGTCCAAAGCTGATGTCTGCCTGA 357
|| ||||||||||||||||||||||||||||||
Sbjct 651 CCAGACAATGGTCCAAAGCTGATGTCTGCCTGA 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16739160417
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5