BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345475
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37435.1 | Symbols: | Cystatin/monellin superfamily protein... 486 1e-136
> AT2G37435.1 | Symbols: | Cystatin/monellin superfamily protein
| chr2:15709808-15710912 FORWARD LENGTH=698
Length=698
Score = 486 bits (263), Expect = 1e-136
Identities = 501/609 (82%), Gaps = 44/609 (7%)
Strand=Plus/Plus
Query 110 ATGATTCAGAAGATTGGAGAACTACGCTAGAACCTGTGGATCTGGAATACACGGAGGA-G 168
|||||| | ||||||||||| || ||| ||||||||| | |||||| ||||| |
Sbjct 23 ATGATTTACCAGATTGGAGAAATAAGCTGGAACCTGTGTTTTTGGAAT---TTGAGGATG 79
Query 169 GATGATGTTGATG-GG-ACAAGGTATTATCC-TAGTATAAGACGCCGTGAAGATGAAGAG 225
| || |||| || || || | |||||||| | |||||||||||||||| |||||||||
Sbjct 80 GTTG-TGTTCCTGAGGAAC-A-TTATTATCCGT-GTATAAGACGCCGTGAGGATGAAGAG 135
Query 226 ---AAGATCTCGCCGGAGGATGAGTATCT-CCTCATGGAG-AAGCAAGTCGAAGAGTCCA 280
||||||||| |||| || |||||| | |||||||| | ||| ||||||| || ||||
Sbjct 136 CCCAAGATCTCGGCGGAAGAAGAGTAT-TACCTCATGGTGAAAG-AAGTCGAGGATTCCA 193
Query 281 AGGGTTTTGACATTGATTTCACCAAGTTCCGCTGCCTTTTCAATTACAC-ACCAGCTGAT 339
||||||||||||| |||||| |||||||||||||| ||||||||||| | ||||| ||||
Sbjct 194 AGGGTTTTGACATCGATTTCGCCAAGTTCCGCTGCGTTTTCAATTAC-CGACCAGTTGAT 252
Query 340 CTCGATCTTGAAAACCAGTTCG-TTTATGAACCAGAAACCACCAGAG-GGTTATTAGACA 397
||||| ||| ||| |||| | ||| ||||||||||| ||||||| | ||| | |||
Sbjct 253 CTCGA---TGACAACGAGTTGGCTTT-GGAACCAGAAACTACCAGAGAGTTTA-TGGAC- 306
Query 398 AG-CTTTCTAGGAAATCCCTTAAGAG-A-TTCAATGCTAAGT-ATAGCAGAAAATATGAG 453
|| || | | ||||||||||| ||| | ||||||| || | |||| | |||||||||
Sbjct 307 AGACTGTGTCGGAAATCCCTT--GAGCATTTCAATG-AAATTCATAGTACAAAATATGAA 363
Query 454 TTTGTCAAGG-TTATCAAAGCCAATTATCACATCACTGCTGGCATCATGTTTTTCATTAC 512
|||||| ||| |||||||||||||| ||||| || |||||||||| |||| |||||||||
Sbjct 364 TTTGTC-AGGTTTATCAAAGCCAATCATCACGTCTCTGCTGGCATGATGTATTTCATTAC 422
Query 513 CTTTGAAGGTAAGCTAC-TT--AACGATGATGACTCTAAACTGTTCCAAACTAAGATCCG 569
||||||||||||||||| || || ||||||||||| |||| ||||||| ||||| || |
Sbjct 423 CTTTGAAGGTAAGCTACTTTCCAATGATGATGACTCAAAACAGTTCCAAGCTAAGCTCTG 482
Query 570 CTATTGCGGTCGTACCATCGATATTGTCTCATGCGAACTCAAA-CCTGAGA-AAAATGTT 627
|||||||||| ||||| ||| || ||||||||||||||||| ||| ||| |||| |||
Sbjct 483 CTATTGCGGTGGTACCCCCGAAATCATCTCATGCGAACTCAAACCCT-AGAGAAAA-GTT 540
Query 628 CACTCCATTGAAGCTCTGGAGAAAGAAGATCCCAAGAAACCAAGATTGACCCTGGTGCCA 687
|||||||| ||||| | ||||||||||||||||||||||||||||||||| || | ||||
Sbjct 541 CACTCCATCGAAGCACCGGAGAAAGAAGATCCCAAGAAACCAAGATTGACACTTGAGCCA 600
Query 688 TCTAATGTC 696
|||||||||
Sbjct 601 TCTAATGTC 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5