BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345481
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream op... 806 0.0
AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 806 0.0
> AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream
open reading frame 52 | chr2:15737842-15739848 FORWARD LENGTH=1455
Length=1455
Score = 806 bits (436), Expect = 0.0
Identities = 540/588 (92%), Gaps = 15/588 (3%)
Strand=Plus/Plus
Query 1 ATGAGCTCTGTTTGTGGTAAGTTGGATTACAAAGATGCAGACTTTGACATCTCCACTTCG 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 602 ATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAGACTTTGACATCTCTACTTCG 661
Query 61 AGTGCCACGCAATGTTCTAAAGGCTCGAAGAATACCTCGTTTACTGGCTCTGAAGATTCT 120
||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 662 AGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGTTTACTGGCTCTGAAGATTCT 721
Query 121 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGCGAATGAAGGTACCGCT 180
||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 722 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGTGAATGATGAAACCGCT 781
Query 181 GATCAGGATTTCGGCAAATCCACTTTAAGTCCTAACTCTTCAGATGATGAAGACAAGGAT 240
| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 782 GTTCAGGATTTCGGCAAATCTGTTTTAAGTCCTAACTCTTCTGATGATGAAGACAAGGAT 841
Query 241 GAGAATCTTAAGACT---ACACCAGTTGTTCTCATCCCAGCCATAAAAGGCAGCCGAGAG 297
||||| |||| |||| |||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 842 GAGAACCTTATGACTCAGACACCAATTGTTCTTATCCCAGCCATAAAAGGCAGTCGAGAG 901
Query 298 AAGCATGGCTTGTCACTGAGGAAGTTGAGTGTTTCATGGGCGGCTGATGTGTATGATCCT 357
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 902 AAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCATGGGGGGCTGATGTGTATGATCCT 961
Query 358 CCTCCCTCGATAGCCT--C-C-CA--CACAAGAAGCAAGAAACAACTA-CAGAAATCAAA 410
|||||||||||||||| | | || |||||||||||||||||| | | |||||||| ||
Sbjct 962 CCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCAAGAAACAGC-AGCAGAAATCCAA 1020
Query 411 GAGCAAAGACAATCACAGGAAGACCGGAAAGAAAGGACAGAAGAGC-AAAGACAACTCTT 469
|||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 1021 GAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGACAGAAG-TCTAAAGACAACTCTT 1079
Query 470 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGCCGCGAAA 529
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1080 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGTCGAGACA 1139
Query 530 AATTTGAATGGGTAACTCAGATGCCGT-TAGTTGCAGCATCTTCTTGA 576
||||||| ||||||||||||||||| | |||||||||||||||| |||
Sbjct 1140 AATTTGATTGGGTAACTCAGATGCC-TATAGTTGCAGCATCTTCATGA 1186
> AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G53670.2);
Has 186 Blast hits to 186 proteins in 35 species: Archae -
0; Bacteria - 2; Metazoa - 14; Fungi - 7; Plants - 154; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15737842-15739848
FORWARD LENGTH=1455
Length=1455
Score = 806 bits (436), Expect = 0.0
Identities = 540/588 (92%), Gaps = 15/588 (3%)
Strand=Plus/Plus
Query 1 ATGAGCTCTGTTTGTGGTAAGTTGGATTACAAAGATGCAGACTTTGACATCTCCACTTCG 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 602 ATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAGACTTTGACATCTCTACTTCG 661
Query 61 AGTGCCACGCAATGTTCTAAAGGCTCGAAGAATACCTCGTTTACTGGCTCTGAAGATTCT 120
||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 662 AGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGTTTACTGGCTCTGAAGATTCT 721
Query 121 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGCGAATGAAGGTACCGCT 180
||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 722 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGTGAATGATGAAACCGCT 781
Query 181 GATCAGGATTTCGGCAAATCCACTTTAAGTCCTAACTCTTCAGATGATGAAGACAAGGAT 240
| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 782 GTTCAGGATTTCGGCAAATCTGTTTTAAGTCCTAACTCTTCTGATGATGAAGACAAGGAT 841
Query 241 GAGAATCTTAAGACT---ACACCAGTTGTTCTCATCCCAGCCATAAAAGGCAGCCGAGAG 297
||||| |||| |||| |||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 842 GAGAACCTTATGACTCAGACACCAATTGTTCTTATCCCAGCCATAAAAGGCAGTCGAGAG 901
Query 298 AAGCATGGCTTGTCACTGAGGAAGTTGAGTGTTTCATGGGCGGCTGATGTGTATGATCCT 357
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 902 AAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCATGGGGGGCTGATGTGTATGATCCT 961
Query 358 CCTCCCTCGATAGCCT--C-C-CA--CACAAGAAGCAAGAAACAACTA-CAGAAATCAAA 410
|||||||||||||||| | | || |||||||||||||||||| | | |||||||| ||
Sbjct 962 CCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCAAGAAACAGC-AGCAGAAATCCAA 1020
Query 411 GAGCAAAGACAATCACAGGAAGACCGGAAAGAAAGGACAGAAGAGC-AAAGACAACTCTT 469
|||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 1021 GAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGACAGAAG-TCTAAAGACAACTCTT 1079
Query 470 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGCCGCGAAA 529
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1080 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGTCGAGACA 1139
Query 530 AATTTGAATGGGTAACTCAGATGCCGT-TAGTTGCAGCATCTTCTTGA 576
||||||| ||||||||||||||||| | |||||||||||||||| |||
Sbjct 1140 AATTTGATTGGGTAACTCAGATGCC-TATAGTTGCAGCATCTTCATGA 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5