BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345494
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37580.1 | Symbols: | RING/U-box superfamily protein | chr2... 874 0.0
AT2G37585.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 311 9e-84
> AT2G37580.1 | Symbols: | RING/U-box superfamily protein | chr2:15764728-15765553
FORWARD LENGTH=826
Length=826
Score = 874 bits (473), Expect = 0.0
Identities = 625/696 (90%), Gaps = 19/696 (3%)
Strand=Plus/Plus
Query 1 ATGTTCAATAATACAACAACAACCTTCGGCTCCGGCGCCGGCGTCGTCGTCGTCCCACCT 60
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct 18 ATGTTCAATAATACAACAACCTCCTTCGGCTCCGGCCCCGGCATCGTCGTCGTCCCAACT 77
Query 61 CCCGCCGTTACAATTCCCACCCCCGTCTTCCCCGGCACCACCATCACTTCCAATTCCACC 120
|||||| ||| |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct 78 CCCGCCACAACAGTTCCCACCACCGACTTCCCCGGTACCACCATCACTTCCAACTCCACC 137
Query 121 TTCATCATCATCGGACCTCCACCACCGTTCCCAGCTCCTCCACGGAGCATCGACCTTTCT 180
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 138 TTCATTATCATCGGACCTCCACCACCGTTCCCAGCTCCTCCCCGGAGCATCGACCTTACT 197
Query 181 CCTCTCAAACTAATCTTCGCCGTCATCGCCATCGTCGCCGTTCCCGCTTTAGCTTACGCT 240
||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 198 CCTCTCAAACTAATCTTCGTCGTCATCGCCTTCGTCGCCGTTCCCGCTTTAGTTTACGCT 257
Query 241 CTCTTCTTCACCAGCCCTTGTTCTTCCTCCCGCCGCAACTCCTCTTCATCTCGCCGCAGC 300
|||||||||| | |||| ||||||||||||||||||||||||||||| | || ||||| |
Sbjct 258 CTCTTCTTCAACGGCCCATGTTCTTCCTCCCGCCGCAACTCCTCTTC-T-TC-CCGCACC 314
Query 301 AGCACTTCCTCCGACGATACACCTCACGTCACCGTCGATATCACCCCGCCGATCACATCC 360
||| |||||||||||||||||||||||| |||||||| | |||||||||||| || ||
Sbjct 315 AGCTCTTCCTCCGACGATACACCTCACGCCACCGTCG--A-CACCCCGCCGAT--CA-CC 368
Query 361 GAGACCACCGTAACTCCTGACTCCGGCGGGAAAATCCAAAAAGATACACATTCCAAGGAG 420
||||||||||||||| | || ||||| |||||| |||| |||||||||||||| || |||
Sbjct 369 GAGACCACCGTAACTTCGGAATCCGGAGGGAAATTCCACAAAGATACACATTCTAAAGAG 428
Query 421 ATCGGAAACGAGTGCACCGTGTGTCTCATGGTGTTCACCGACGGCGATGAAATCCGGCAG 480
|| |||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 429 ATTGGAAACGAGTGCTCCGTGTGTCTCATGGTGTTCACCGACAGCGATGAACTCCGGCAA 488
Query 481 CTTATCGAGTGTAAGCACGCGTTCCACGTGTCGTGTATTGAAGA-GTGGCTTAAGGATCA 539
|| | ||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 489 CTAAGCGAGTGTAAACACGCGTTCCACGTGTTATGTATTG-AGACGTGGCTTAAGGATCA 547
Query 540 TCCTAATTGTCCCATTTGCCGAACTGACGTCTCCGTTAAACAACAGACCGAAGCAGCCAA 599
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 548 TCCTAATTGTCCCATTTGTCGAACTGACGTCTCCGTTAAACAACAAACCGAAGCTCCCAA 607
Query 600 CGT-CACCGTTAACGTTAACGGTAACGTGAATCGCAGCGGCGGAAACCGTCGAGTTTCAG 658
||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 608 CGTTC-CCGTTAACGTTAACGGAAACGTGAATCGCAGCGGCGGAAACCGTCGCGTTTCGG 666
Query 659 CGACTAATAATAATAGAGATGACGATTGGCGTCAAG 694
| |||| || |||||||||||||||||||||
Sbjct 667 CCACTAGTA------GAGATGACGATTGGCGTCAAG 696
> AT2G37585.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr2:15765784-15767878
FORWARD LENGTH=1391
Length=1391
Score = 311 bits (168), Expect = 9e-84
Identities = 190/201 (95%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 693 AGATTCATCCTCCGGTTTAGCTCCAAATCGGAACTTATCCAGAACATCGAAGATTCCGAG 752
|||||||||||||||||||||||||||||| |||||| ||| || ||||| |||||||||
Sbjct 194 AGATTCATCCTCCGGTTTAGCTCCAAATCGAAACTTAGCCACAAAATCGACGATTCCGAG 253
Query 753 GTTTGCGTATTTGGTAACGGGAACGAAAGGAGATTGGAAACGAGTGAAGCGGCTGCTTAA 812
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 254 GTTTGCGTATTTGGTAACGGGAACGAAAGGAGATGGGAAACGAGTGAAGCGGCTGCTTAA 313
Query 813 TGCAATACACCATCCGAGAAACTACTATCTTCTTCATTTGGATCTCGAAGCTTCATATGA 872
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 314 AGCAATACATCATCCGAGAAATTACTATCTGCTTCATTTGGATCTCGAAGCTTCAGATGA 373
Query 873 AGAGAGAATGGAGCTGGCGAA 893
|||||||||||||||||||||
Sbjct 374 AGAGAGAATGGAGCTGGCGAA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5