BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345495
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37600.1 | Symbols: | Ribosomal protein L36e family protein... 527 3e-149
AT3G53740.2 | Symbols: | Ribosomal protein L36e family protein... 385 2e-106
> AT2G37600.1 | Symbols: | Ribosomal protein L36e family protein
| chr2:15774245-15775374 REVERSE LENGTH=577
Length=577
Score = 527 bits (285), Expect = 3e-149
Identities = 324/342 (95%), Gaps = 5/342 (1%)
Strand=Plus/Plus
Query 1 ATGACAACTCCAGCGGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGCCACGTCGTC 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 71 ATGACAACTCCAGCAGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGACACGTCGTC 130
Query 61 ACCAGACGCGAGCTAGCTCCTCGTCCCAATTCTCGCAAAGGGAAAACGAGCAAGAGGACC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 ACCAGACGTGAGCTAGCTCCTCGTCCCAATTCTCGCAAAGGGAAAACGAGCAAGAGGACC 190
Query 121 ATATTCATCAG-AAACGTGATCAAGGAAGTAGCTGGATTGGCTCCTTATGAGAAGAGAAT 179
|||||||| || |||| |||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 191 ATATTCATAAGAAAAC-TGATTAGGGAAGTAGCTGGAATGGCTCCTTATGAGAAGAGAAT 249
Query 180 CACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTT 309
Query 240 GGGTACTCACAAGAGAGCTAAAAGGAAGAGAGAGGAGATGTCTGGTGTTCTCCGCAAGAT 299
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 310 GGGTACTCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGAT 369
Query 300 CAGGTCTGGTGGTGGTG--G-TGCTGCTGAGAAGAAGAAGTA 338
|||||| |||||||| | ||||||||||||||||| |||
Sbjct 370 GAGGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTA 411
> AT3G53740.2 | Symbols: | Ribosomal protein L36e family protein
| chr3:19913707-19915016 REVERSE LENGTH=627
Length=627
Score = 385 bits (208), Expect = 2e-106
Identities = 297/340 (87%), Gaps = 6/340 (2%)
Strand=Plus/Plus
Query 1 ATGACAACTCCAGC-GGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGCCACGTCGT 59
|||||||||||| | ||||||||||||||||||||||| |||||||| || || || ||
Sbjct 75 ATGACAACTCCA-CAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAGGGACATGTTGT 133
Query 60 CACCAGACGCGAGCTAGCTCCTCGTCC-CAATTCTCGCAAAGGGAAAACGAGCAAGAGGA 118
|||||||| || ||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 134 TACCAGACGTGAATTAGCTCCTCGTCCTC-GTTCTCGCAAAGGAAAAACGAGCAAGAGGA 192
Query 119 CCATATTCATCAGAAACGTGATCAAGGAAGTAGCTGGAT-TGGCTCCTTATGAGAAGAGA 177
| || || ||||||||| |||| |||||||| ||||| | ||||| ||||||||||||
Sbjct 193 CAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGG-TCAAGCTCCCTATGAGAAGAGA 251
Query 178 ATCACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAG 237
|||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 252 ATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGTTGCTAAGAGGAAG 311
Query 238 TTGGGTACTCACAAGAGAGCTAAAAGGAAGAGAGAGGAGATGTCTGGTGTTCTCCGCAAG 297
||||| || ||||||||||| || | ||||||||||||||||| ||||||||||||||
Sbjct 312 TTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAG 371
Query 298 ATCAGGTCTGGTGGTGGTGGTGCTGCTGAGAAGAAGAAGT 337
|| |||||||| ||||||||||| |||||||||||||||
Sbjct 372 ATGAGGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGT 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5