BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg345496

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37610.1 | Symbols:  | unknown protein; Has 21 Blast hits to...   599    8e-171


> AT2G37610.1 | Symbols:  | unknown protein; Has 21 Blast hits 
to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:15776869-15777673 REVERSE 
LENGTH=486
Length=486

 Score =  599 bits (324),  Expect = 8e-171
 Identities = 445/499 (89%), Gaps = 26/499 (5%)
 Strand=Plus/Plus

Query  1    ATGGAGATTGGAAACGTAAAGGCAGATGTCAATTTGGTGCTTAACTTGCGAGAAGCAGAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGATTGGAAACGTAAAGGCAGATGTCAATTTGGTGCTTAACTTGCGAGAAGCAGAA  60

Query  61   AGGCATCGGCGATATTTTGATTGCTTTATCAACGAGAAATTA---TTAT-A----T-CGT  111
            |||||||||||||||||||||| ||||||| |||||| ||||   |||| |    |  ||
Sbjct  61   AGGCATCGGCGATATTTTGATTACTTTATCGACGAGATATTATGGTTATCATTTTTAGGT  120

Query  112  ATGTCGGAGACGAGCTTGAAAGAGGATGAGGTAACGTTAGGTGGGGTTAAAGAGACGATA  171
            |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct  121  ATGTCGGAGACGAGCTTGAAAGAGGAAGAGGTAACGTTAGGTGGTGTTAAAGAGACGAGA  180

Query  172  GAAGAAGAATGTTCAGACAATAAACTTGTGTTGGAAATTTGTCggaaaaggaagagatca  231
            |||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||| |
Sbjct  181  GAAGAAGAATGTTCCGACGATAAACTTGTGTTGGATATTTGTCTGAAAAGGAAGAGATTA  240

Query  232  gatgaagaagaagaagaag---ttgtggaggaagagaatgatggattcaagaCACCGACT  288
            |||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||
Sbjct  241  GATGAAGAAGAAGAAGAAGAAGTTGTGGAGGAAGAGAATGATGGGTTCAAGACACCGACT  300

Query  289  CGTCCAGAGAATAGAATCCCTA-AGGTCACAGAATGTCCACCGGCGCCGAGGAAAGGGGA  347
            ||||| |||||||||||||||| || | | |||||||||||||||||||| |||| |   
Sbjct  301  CGTCCGGAGAATAGAATCCCTATAGTT-AGAGAATGTCCACCGGCGCCGATGAAACG---  356

Query  348  ATATTTATATTTGTCGGGGATGCTTAGAGGTAAAACAATGTACTGCCGGAGACGGTTGAG  407
             | |        ||||| |||| ||||||||| ||||||||| |||||||||||||||||
Sbjct  357  -T-TC-------GTCGGAGATGTTTAGAGGTAGAACAATGTATTGCCGGAGACGGTTGAG  407

Query  408  TTTCTCGCCGGAAGATGACGTGAGCTCGTTTATAACAGATTTGCAGTGGAGGACGACGAC  467
            ||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||| ||
Sbjct  408  TTTCTTGCCGGAAGATGACGTCAACTCGTTTATAACGGATTTGCAGTGGAGGACGACAAC  467

Query  468  AATGACGATCAAGAAATAA  486
            |||||||||||||||||||
Sbjct  468  AATGACGATCAAGAAATAA  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5