BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345499
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37585.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1037 0.0
> AT2G37585.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr2:15765784-15767878
FORWARD LENGTH=1391
Length=1391
Score = 1037 bits (561), Expect = 0.0
Identities = 622/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 22 GATATTTTACATATTTTCTCATACTTGCCGCGCTACCTGAACTTTATCGAGCATACAAGC 81
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 585 GATATTTTGCATATATTCTCATACTTGCCACGCTACCTGAACTTTATCGAGCACACAAGC 644
Query 82 AACATCGGTTGGAAAGAGAACCAAAGAGCAAGGCCTATCATTATCGATCCTGGCTTTTAC 141
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 645 AACATCGGTTGGAAAGAGAACCAAAGAGCAAGGCCTATCATTATTGATCCTGGTTTTTAC 704
Query 142 CATTTGAAGAAATCTGGTGTCTTTTGGGCTAAAGAACGGAGATCTTTGCCTGCTTCATTC 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CATTTGAAGAAATCTGGTGTCTTTTGGGCTAAAGAACGGAGATCTTTGCCTGCTTCATTC 764
Query 202 AAACTTTTCATGGGTTCAACCAGCGTCGCTTTAACAAGACCGTTCCTCGAGTTTTGTATT 261
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 765 AAACTTTTCATGGGTTCAACCAGCGTTGCTTTAACAAGACCGTTCCTCGAGTTTTGCATT 824
Query 262 TGGGGATGGGACAATCTCCCAAGAACGCTATTGATGTACTATACCAACCTCCTCTTGTCA 321
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 TGGGGATGGGATAATCTCCCAAGAACGCTATTGATGTACTATACCAACTTCCTCTTGTCA 884
Query 322 ACCGAAGGCTATTTTCAGACAGTTGTGTGCAACAATAAAGATTATCAGAACACAACGGTT 381
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCTGAAGGCTACTTTCAGACAGTTGTGTGCAACAATAAAGATTATCAGAACACAACGGTT 944
Query 382 AACCATGACCTGCATTACACAAACTGGGATCCGCTTCAACAGCGCACCCTGAATGTAACA 441
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 945 AACCACGACCTGCATTACACAAAATGGGATCCGCTTCAACAGCGCACCCTGAATGTAACG 1004
Query 442 GTTGAGAATTTCCGCGATATGGTCCAAAGCGGCGCTCCATTTGCAAGGGAGTTCCGAGAG 501
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1005 GTTGAGAATTTCCGCGATATGGTCCAAAGCGGGGCTCCATTCGCAAGGGAGTTTCGAGAG 1064
Query 502 GATGATCTCGTACTCGATAAGATTGACAACGAGCTGCTAGGTCAAACCGATAGTGGATTG 561
|||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 1065 GATGATCTTGTACTCGATAAGATTGACATTGAGCTACTAGGTCAAACCGATACTGGATTG 1124
Query 562 GGGTTGAATATTCCGGA-GATTGTTAAGCCAACGGTTAGTTGGAAGAGGCTTGAGAAGCT 620
| |||||| | |||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1125 GAGTTGAAGACTCCGGATG-TTGTTAAACCAACGGTTAGTTGGAAGAGGCTTGAGAAGCT 1183
Query 621 CATGGTTAGGCTTCTTGATCATGAGAATTTCAGGGCTAAGCAATGTAAATAA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CATGGTTAGGCTTCTTGATCATGAGAATTTCAGGGCTAAGCAATGTAAATAA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5