BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345506
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37650.1 | Symbols: | GRAS family transcription factor | ch... 2580 0.0
> AT2G37650.1 | Symbols: | GRAS family transcription factor |
chr2:15792623-15795235 FORWARD LENGTH=2522
Length=2522
Score = 2580 bits (1397), Expect = 0.0
Identities = 1679/1807 (93%), Gaps = 52/1807 (3%)
Strand=Plus/Plus
Query 1 ATGATTACTGAACCAAGTCTAACCGGGATTTCAGGTACGGTTAACCGGAACCGTTTATCC 60
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1 ATGATTACTGAACCAAGTCTAACCGGGATTTCAGGTATGGTTAATCGGAACCGTTTATCC 60
Query 61 GGTTTACCCGATCAATCC-GCTTCGCATAGCTTCACTCCGGTGACACTATACGACGGTTT 119
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GGTTTACCCGATCAA-CCTTCTTCGCATAGCTTCACTCCGGTAACACTATACGACGGTTT 119
Query 120 CAATTACAATCTCTCCTCCGATCATAGAAACACCGTCGTAGCTCCGTCTCAGAATTCAGT 179
|||||||||||||||||||||||||| ||||||||| ||||| || | ||||||||||
Sbjct 120 CAATTACAATCTCTCCTCCGATCATATAAACACCGTTGTAGCAGCGCCGGAGAATTCAGT 179
Query 180 CTTTATTCGGgaagaagaagaag-a-a-gaTCCGGCTGATGATTTCGATTTCTCCGATGC 236
||||| |||||||||||||||| | | ||||| |||||||||||||||||||| || ||
Sbjct 180 TTTTATCCGGGAAGAAGAAGAAGAAGAGGATCCAGCTGATGATTTCGATTTCTCTGACGC 239
Query 237 TGTTTTAGGATACATTAGTCAGATGTTGAATGAGGAAGACATGGATGATAAAGTCTGCAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTTTAGGATACATTAGTCAGATGTTGAATGAGGAAGACATGGATGATAAAGTCTGCAT 299
Query 297 GCTTCAAGAGTCTCTGGATCTGGAAACAGCTGAGAGATCGTTATACGAAGCTATTGGTAA 356
||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 300 GCTTCAAGAGTCTCTAGATCTCGAAGCTGCTGAGAGATCGTTATACGAAGCTATTGGTAA 359
Query 357 GAAGTATCCTCCATCTCCAGAACGAAACTTAGCTTTCGCTGATA-GAAACGA-CGAGAAT 414
|||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||
Sbjct 360 GAAGTATCCTCCATCTCCAGAACGAAACTTAGCTTTCGCTGA-ACGAAAC-AGCGAGAAT 417
Query 415 CTTGACCGTGTGGTTCCAGGAAACTACACTGGAGGTGATTGTATAGGTTTCGGGAACGGT 474
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 418 CTTGACCGTGTGGTTCCAGGAAACTACACTGGAGGAGATTGTATAGGTTTTGGGAACGGT 477
Query 475 GGAATCAAGCCTTTGAGTGGTGGTTTCACTTTGGATTTTCGAAAT-C-C-------TTCC 525
|||||||||||||||||| ||||||| |||||||||||||||||| | | |||
Sbjct 478 GGAATCAAGCCTTTGAGTAGTGGTTTTACTTTGGATTTTCGAAATCCTCAGAGTTGTTCT 537
Query 526 TCGGTTCTAAGTGTTCCACAATCTAATGGTTTGATTACTATCTATGGAGATGGAATTGTT 585
||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 538 TCGATTCTAAGTGTTCCACAATCTAATGGTTTAATTACTATCTACGGAGATGGAATTGAT 597
Query 586 GAATCGTCGAAGAAGAGTTTGTATCCTGATTCGAATCGGGAGAGTCATCAATCTGTTTGG 645
|||||||| | | | | | | | |||||||||| ||||||||||||||||
Sbjct 598 GAATCGTC---G-A-A----G-A-----A--C-AATCGGGAGAATCATCAATCTGTTTGG 639
Query 646 TTGTTTAGTAGTGGGATTGAAGAAGCTAGTAGGTTTCTTCCTGAACAAAAC------ATT 699
|||||||| ||| |||||||||||||| ||||||| ||||||| ||||| |||
Sbjct 640 TTGTTTAGGCGTGAGATTGAAGAAGCTAATAGGTTTAATCCTGAAGAAAACGAGTTGATT 699
Query 700 GTGAATTTCAGAGAGGAGAATTGTATGAACAAAGGAAGGAAAAACTCTAGCCGTGATGAG 759
|||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||
Sbjct 700 GTGAATTTCAGAGAGGAGAATTGTGTGAGCAAAGCAAGGAAGAACTCTAGCCGTGATGAG 759
Query 760 ATTTGTGTGGAAGAAGAGAGGAGTAGTAAATTGCCTGCAGTGTTTGGTGAGGATATTTTG 819
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 760 ATTTGTGTTGAAGAAGAGAGGAGTAGTAAATTACCTGCAGTGTTTGGTGAGGATATTTTG 819
Query 820 AGGTCAGATGTTGTTGATAAGATCTTGGTTCATGTACCAGGAGAAGAGAGCATGAAGGAG 879
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 820 AGGTCAGATGTTGTAGATAAGATCTTGGTTCATGTACCAGGAGGAGAGAGCATGAAGGAG 879
Query 880 TTTGATGCGTTGCGTGAAGTTTTGAAGAAAGGAGTGGAGAAGAAGAAAGCTTCAG-TGGC 938
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 880 TTTAATGCGTTGCGTGACGTTTTGAAGAAAGGAGTGGAGAAGAAGAAAGCTTCAGAT-GC 938
Query 939 TCAAGGTGggaagagac--g--aga-g-agaggacgaggacgtggaagaggaggaggagg 992
||||||||||||||||| | ||| | |||||||| ||| | |||||||||||||||||
Sbjct 939 TCAAGGTGGGAAGAGACGAGCCAGAGGAAGAGGACGTGGAAGAGGAAGAGGAGGAGGAGG 998
Query 993 aggGCAAAATGGGAAAAAAGAAGTTGTGGATTTGAGAAGTTTATTGATACATTGTTCTCA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 999 AGGGCAAAATGGGAAAAAAGAAGTTGTGGATTTGAGAAGTTTATTGATACATTGTGCTCA 1058
Query 1053 AGCTGTTGCAGCTGATGATCGTAGATGTGCGGGTCAGTTGTTGAAACAGATTAGACTGCA 1112
|||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||
Sbjct 1059 AGCTGTTGCAGCTGATGATCGTAGGTGTGCAGGTCAGTTGTTAAAACAGATAAGATTGCA 1118
Query 1113 TTCTACGCCGTTTGGTGATGGGAACCAGAGGTTGGCTCATTGTTTTGCTAATGGTCTCGA 1172
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1119 TTCTACGCCGTTTGGTGATGGGAATCAGAGGTTGGCTCATTGTTTTGCTAATGGTCTCGA 1178
Query 1173 GGCGAGGTTAGCTGGTACTGGGAGTCAGATTTACAAAGGGATTGTGAGTAAACCGAGATC 1232
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1179 GGCGAGGTTAGCCGGTACTGGAAGCCAGATTTACAAAGGGATTGTGAGTAAACCGAGATC 1238
Query 1233 TGCTGCAGCTGTGTTGAAGGCTCACCAGCTTTTTCTTGCGTGTTGTCCTTTTAGGAAGCT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1239 CGCTGCAGCTGTGTTGAAGGCTCACCAGCTTTTTCTTGCGTGTTGTCCTTTTAGAAAGCT 1298
Query 1293 CTCTTATTTCATAACTAATAAGACGATACGCGATCTTGTTGGGAATTCTCAGCGGGTTCA 1352
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 1299 CTCTTATTTCATAACTAATAAGACGATACGTGATCTTGTTGGGAACTCTCAGCGCGTTCA 1358
Query 1353 TGTTATTGATTTTGGTATTCTTTACGGTTTCCAGTGGCCAACTCTTATTCACCGGTTTTC 1412
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1359 TGTTATTGATTTTGGTATTCTTTACGGTTTCCAATGGCCAACTCTTATTCACCGGTTTTC 1418
Query 1413 GATGTATGGATCACCGAAGGTTAGGATCACTGGGATTGAGTTTCCACAGCCCGGGTTTCG 1472
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1419 GATGTATGGATCACCGAAGGTTAGGATCACCGGGATTGAGTTTCCGCAGCCCGGGTTTCG 1478
Query 1473 TCCAGCACAGCGGGTTGAAGAAACTGGTCAAAGGTTAGCAGCGTATGCCAAACAATTTGG 1532
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1479 TCCGGCACAGCGGGTTGAAGAAACTGGTCAAAGGTTAGCAGCGTATGCCAAACTCTTTGG 1538
Query 1533 GGTGCCATTTGAGTATAAAGCAATTGCTAAGAAGTGGGATGCAGTTCAACTTGAAGATCT 1592
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1539 GGTGCCATTTGAGTATAAAGCAATTGCTAAGAAGTGGGATGCAATTCAACTTGAAGATCT 1598
Query 1593 TGATATCGACAGGGATGAGATTACTGTTGTTAATTGCCTGTACCGGGCTGAGAATTTACA 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1599 TGATATCGACAGGGATGAGATTACTGTTGTTAATTGCCTGTACCGGGCTGAGAATTTGCA 1658
Query 1653 TGATGAGTCAGTCAAAGTAGAAAGTTGTAGAGACACTGTTCTCAATTTGATCGGGAAGAT 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 TGATGAGTCAGTCAAAGTAGAAAGTTGTAGAGACACTGTTCTCAATTTGATCGGGAAGAT 1718
Query 1713 CAATCCCGATCT-TTTCGTCTTTGGCATAGTGAATGGTGCATACAACGCACCGTTTTTCG 1771
|||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1719 CAATCCTGATCTCTTT-GTCTTTGGCATTGTGAATGGTGCATACAACGCACCGTTTTTCG 1777
Query 1772 TGACACG 1778
| |||||
Sbjct 1778 TAACACG 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5