BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg345509 Length=2223 Score E Sequences producing significant alignments: (Bits) Value AT2G37650.1 | Symbols: | GRAS family transcription factor | ch... 3125 0.0 > AT2G37650.1 | Symbols: | GRAS family transcription factor | chr2:15792623-15795235 FORWARD LENGTH=2522 Length=2522 Score = 3125 bits (1692), Expect = 0.0 Identities = 1981/2112 (94%), Gaps = 54/2112 (3%) Strand=Plus/Plus Query 1 ATGATTACTGAACCAAGTCTAACCGGGATTTCAGGTACGGTTAACCGGAACCGTTTATCC 60 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1 ATGATTACTGAACCAAGTCTAACCGGGATTTCAGGTATGGTTAATCGGAACCGTTTATCC 60 Query 61 GGTTTACCCGATCAATCC-GCTTCGCATAGCTTCACTCCGGTGACACTATACGACGGTTT 119 ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| Sbjct 61 GGTTTACCCGATCAA-CCTTCTTCGCATAGCTTCACTCCGGTAACACTATACGACGGTTT 119 Query 120 CAATTACAATCTCTCCTCCGATCATAGAAACACCGTCGTAGCTCCGTCTCAGAATTCAGT 179 |||||||||||||||||||||||||| ||||||||| ||||| || | |||||||||| Sbjct 120 CAATTACAATCTCTCCTCCGATCATATAAACACCGTTGTAGCAGCGCCGGAGAATTCAGT 179 Query 180 CTTTATTCGGgaagaagaagaag-a-a-gaTCCGGCTGATGATTTCGATTTCTCCGATGC 236 ||||| |||||||||||||||| | | ||||| |||||||||||||||||||| || || Sbjct 180 TTTTATCCGGGAAGAAGAAGAAGAAGAGGATCCAGCTGATGATTTCGATTTCTCTGACGC 239 Query 237 TGTTTTAGGATACATTAGTCAGATGTTGAATGAGGAAGACATGGATGATAAAGTCTGCAT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGTTTTAGGATACATTAGTCAGATGTTGAATGAGGAAGACATGGATGATAAAGTCTGCAT 299 Query 297 GCTTCAAGAGTCTCTGGATCTGGAAACAGCTGAGAGATCGTTATACGAAGCTATTGGTAA 356 ||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||| Sbjct 300 GCTTCAAGAGTCTCTAGATCTCGAAGCTGCTGAGAGATCGTTATACGAAGCTATTGGTAA 359 Query 357 GAAGTATCCTCCATCTCCAGAACGAAACTTAGCTTTCGCTGATA-GAAACGA-CGAGAAT 414 |||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||| Sbjct 360 GAAGTATCCTCCATCTCCAGAACGAAACTTAGCTTTCGCTGA-ACGAAAC-AGCGAGAAT 417 Query 415 CTTGACCGTGTGGTTCCAGGAAACTACACTGGAGGTGATTGTATAGGTTTCGGGAACGGT 474 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 418 CTTGACCGTGTGGTTCCAGGAAACTACACTGGAGGAGATTGTATAGGTTTTGGGAACGGT 477 Query 475 GGAATCAAGCCTTTGAGTGGTGGTTTCACTTTGGATTTTCGAAAT-C-C-------TTCC 525 |||||||||||||||||| ||||||| |||||||||||||||||| | | ||| Sbjct 478 GGAATCAAGCCTTTGAGTAGTGGTTTTACTTTGGATTTTCGAAATCCTCAGAGTTGTTCT 537 Query 526 TCGGTTCTAAGTGTTCCACAATCTAATGGTTTGATTACTATCTATGGAGATGGAATTGTT 585 ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | Sbjct 538 TCGATTCTAAGTGTTCCACAATCTAATGGTTTAATTACTATCTACGGAGATGGAATTGAT 597 Query 586 GAATCGTCGAAGAAGAGTTTGTATCCTGATTCGAATCGGGAGAGTCATCAATCTGTTTGG 645 |||||||| | | | | | | | |||||||||| |||||||||||||||| Sbjct 598 GAATCGTC---G-A-A----G-A-----A--C-AATCGGGAGAATCATCAATCTGTTTGG 639 Query 646 TTGTTTAGGCGTGAGATTGAAGAAGCTAATAGGTTTCTTCCTGAACAAAAC------ATT 699 |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| Sbjct 640 TTGTTTAGGCGTGAGATTGAAGAAGCTAATAGGTTTAATCCTGAAGAAAACGAGTTGATT 699 Query 700 GTGAATTTCAGAGAGGAGAATTGTATGAACAAAGGAAGGAAAAACTCTAGCCGTGATGAG 759 |||||||||||||||||||||||| ||| ||||| |||||| |||||||||||||||||| Sbjct 700 GTGAATTTCAGAGAGGAGAATTGTGTGAGCAAAGCAAGGAAGAACTCTAGCCGTGATGAG 759 Query 760 ATTTGTGTGGAAGAAGAGAGGAGTAGTAAATTGCCTGCAGTGTTTGGTGAGGATATTTTG 819 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 760 ATTTGTGTTGAAGAAGAGAGGAGTAGTAAATTACCTGCAGTGTTTGGTGAGGATATTTTG 819 Query 820 AGGTCAGATGTTGTTGATAAGATCTTGGTTCATGTACCAGGAGAAGAGAGCATGAAGGAG 879 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 820 AGGTCAGATGTTGTAGATAAGATCTTGGTTCATGTACCAGGAGGAGAGAGCATGAAGGAG 879 Query 880 TTTGATGCGTTGCGTGAAGTTTTGAAGAAAGGAGTGGAGAAGAAGAAAGCTTCAG-TGGC 938 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | || Sbjct 880 TTTAATGCGTTGCGTGACGTTTTGAAGAAAGGAGTGGAGAAGAAGAAAGCTTCAGAT-GC 938 Query 939 TCAAGGTGggaagagac--g--aga-g-agaggacgaggacgtggaagaggaggaggagg 992 ||||||||||||||||| | ||| | |||||||| ||| | ||||||||||||||||| Sbjct 939 TCAAGGTGGGAAGAGACGAGCCAGAGGAAGAGGACGTGGAAGAGGAAGAGGAGGAGGAGG 998 Query 993 aggGCAAAATGGGAAAAAAGAAGTTGTCGATTTGAGAAGTTTATTGATACATTGTGCTCA 1052 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 999 AGGGCAAAATGGGAAAAAAGAAGTTGTGGATTTGAGAAGTTTATTGATACATTGTGCTCA 1058 Query 1053 AGCTGTTGCAGCTGATGATCGTAGATGTGCGGGTCAGTTGTTGAAACAGATTAGACTGCA 1112 |||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |||| Sbjct 1059 AGCTGTTGCAGCTGATGATCGTAGGTGTGCAGGTCAGTTGTTAAAACAGATAAGATTGCA 1118 Query 1113 TTCTACGCCGTTTGGTGATGGGAACCAGAGGTTGGCTCATTGTTTTGCTAATGGTCTCGA 1172 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1119 TTCTACGCCGTTTGGTGATGGGAATCAGAGGTTGGCTCATTGTTTTGCTAATGGTCTCGA 1178 Query 1173 GGCGAGGTTAGCCGGTACTGGGAGTCAGATTTACAAAGGGATTGTGAGTAAACCGAGATC 1232 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1179 GGCGAGGTTAGCCGGTACTGGAAGCCAGATTTACAAAGGGATTGTGAGTAAACCGAGATC 1238 Query 1233 TGCTGCAGCTGTGTTGAAGGCTCACCAGCTTTTTCTTGCGTGTTGTCCTTTTAGGAAGCT 1292 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1239 CGCTGCAGCTGTGTTGAAGGCTCACCAGCTTTTTCTTGCGTGTTGTCCTTTTAGAAAGCT 1298 Query 1293 CTCTTATTTCATAACTAATAAGACGATACGCGATCTTGTTGGGAATTCTCAGCGGGTTCA 1352 |||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 1299 CTCTTATTTCATAACTAATAAGACGATACGTGATCTTGTTGGGAACTCTCAGCGCGTTCA 1358 Query 1353 TGTTATTGATTTTGGTATTCTTTACGGTTTCCAGTGGCCAACTCTTATTCACCGGTTTTC 1412 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1359 TGTTATTGATTTTGGTATTCTTTACGGTTTCCAATGGCCAACTCTTATTCACCGGTTTTC 1418 Query 1413 GATGTATGGATCACCGAAGGTTAGGATCACTGGGATTGAGTTTCCACAGCCCGGGTTTCG 1472 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1419 GATGTATGGATCACCGAAGGTTAGGATCACCGGGATTGAGTTTCCGCAGCCCGGGTTTCG 1478 Query 1473 TCCAGCACAGCGGGTTGAAGAAACTGGTCAAAGGTTAGCAGCGTATGCCAAACAATTTGG 1532 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1479 TCCGGCACAGCGGGTTGAAGAAACTGGTCAAAGGTTAGCAGCGTATGCCAAACTCTTTGG 1538 Query 1533 GGTGCCATTTGAGTATAAAGCAATTGCTAAGAAGTGGGATGCAGTTCAACTTGAAGATCT 1592 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1539 GGTGCCATTTGAGTATAAAGCAATTGCTAAGAAGTGGGATGCAATTCAACTTGAAGATCT 1598 Query 1593 TGATATCGACAGGGATGAGATTACTGTTGTTAATTGCCTGTACCGGGCTGAGAATTTACA 1652 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1599 TGATATCGACAGGGATGAGATTACTGTTGTTAATTGCCTGTACCGGGCTGAGAATTTGCA 1658 Query 1653 TGATGAGTCAGTCAAAGTAGAAAGTTGTAGAGACACTGTTCTCAATTTGATCGGGAAGAT 1712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1659 TGATGAGTCAGTCAAAGTAGAAAGTTGTAGAGACACTGTTCTCAATTTGATCGGGAAGAT 1718 Query 1713 CAATCCCGATCT-TTTCGTCTTTGGCATAGTGAATGGTGCATACAACGCACCGTTTTTCG 1771 |||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1719 CAATCCTGATCTCTTT-GTCTTTGGCATTGTGAATGGTGCATACAACGCACCGTTTTTCG 1777 Query 1772 TGACACGGTTTCGCGAGGCTCTATTTCATTTCTCCTCGATTTTCGACATGCTTGAGACAA 1831 | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1778 TAACACGGTTTCGCGAAGCTCTATTTCATTTCTCCTCGATTTTTGACATGCTTGAGACAA 1837 Query 1832 TTGTGCCACGAGAAGACGAAGAGAGGATGTTCCTTGAGATGGAGGTCTTTGGGAGAGAGG 1891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1838 TTGTGCCACGAGAAGACGAAGAGAGGATGTTCCTTGAGATGGAGGTCTTTGGGAGAGAGG 1897 Query 1892 CATTGAATGTGATTGCTTGCGAAGGTTGGGAAAGAGTGGAGAGGCCTGAGACATACAAGC 1951 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1898 CACTGAATGTGATTGCTTGCGAAGGTTGGGAAAGAGTGGAGAGGCCTGAGACATACAAGC 1957 Query 1952 AGTGGCACGTCCGGGCTATGAGGTCAGGGTTGGTGCAAGTTCCTTTTGACCCAAGCATTA 2011 |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1958 AGTGGCACGTACGGGCTATGAGGTCAGGGTTGGTGCAGGTTCCATTTGACCCAAGCATTA 2017 Query 2012 TGAAGACATCGCTGCATAAGGTCC-CATCATTCTACCACAAGGATTTTGTGATCGATCAA 2070 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 2018 TGAAGACATCGCTGCATAAGGTCCACA-CATTCTACCACAAGGATTTTGTGATCGATCAA 2076 Query 2071 GATAACCGGTGG 2082 |||||||||||| Sbjct 2077 GATAACCGGTGG 2088 Score = 182 bits (98), Expect = 2e-44 Identities = 126/139 (91%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 2086 TTTGTTGTTTCTCAGCTAGGTTCTCCTAACGGTATTCTTGTAGCTAGGATTGATTAGAGA 2145 ||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| Sbjct 2318 TTTGTTGTTTCTCAGCTAGATTCTCCTAACGGTATTCTTGTAGCTAGGGT-GATCAGATT 2376 Query 2146 GTTTGTATATTGCTAGCAGAGTTAACTTGTCTAGATTGTAACACGTACAAGAGGAAGCTT 2205 |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct 2377 GTTTGTATATTGCTAGCAGAGTTAGTTTGTCTAGATTGTAACACATATAAGAGGAAGCTT 2436 Query 2206 AAAGAAACTAATG-TTTAA 2223 | |||||||| || ||||| Sbjct 2437 AGAGAAACTA-TGGTTTAA 2454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110290597365 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5